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Accelerating Barnes-Hut t-SNE Algorithm by Efficient Parallelization on Multi-Core CPUs

2022-12-22 06:38:40
Narendra Chaudhary, Alexander Pivovar, Pavel Yakovlev, Andrey Gorshkov, Sanchit Misra

Abstract

t-SNE remains one of the most popular embedding techniques for visualizing high-dimensional data. Most standard packages of t-SNE, such as scikit-learn, use the Barnes-Hut t-SNE (BH t-SNE) algorithm for large datasets. However, existing CPU implementations of this algorithm are inefficient. In this work, we accelerate the BH t-SNE on CPUs via cache optimizations, SIMD, parallelizing sequential steps, and improving parallelization of multithreaded steps. Our implementation (Acc-t-SNE) is up to 261x and 4x faster than scikit-learn and the state-of-the-art BH t-SNE implementation from daal4py, respectively, on a 32-core Intel(R) Icelake cloud instance.

Abstract (translated)

URL

https://arxiv.org/abs/2212.11506

PDF

https://arxiv.org/pdf/2212.11506.pdf


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