Paper Reading AI Learner

Medical image segmentation with imperfect 3D bounding boxes

2021-08-06 20:51:20
Ekaterina Redekop, Alexey Chernyavskiy

Abstract

The development of high quality medical image segmentation algorithms depends on the availability of large datasets with pixel-level labels. The challenges of collecting such datasets, especially in case of 3D volumes, motivate to develop approaches that can learn from other types of labels that are cheap to obtain, e.g. bounding boxes. We focus on 3D medical images with their corresponding 3D bounding boxes which are considered as series of per-slice non-tight 2D bounding boxes. While current weakly-supervised approaches that use 2D bounding boxes as weak labels can be applied to medical image segmentation, we show that their success is limited in cases when the assumption about the tightness of the bounding boxes breaks. We propose a new bounding box correction framework which is trained on a small set of pixel-level annotations to improve the tightness of a larger set of non-tight bounding box annotations. The effectiveness of our solution is demonstrated by evaluating a known weakly-supervised segmentation approach with and without the proposed bounding box correction algorithm. When the tightness is improved by our solution, the results of the weakly-supervised segmentation become much closer to those of the fully-supervised one.

Abstract (translated)

URL

https://arxiv.org/abs/2108.03300

PDF

https://arxiv.org/pdf/2108.03300.pdf


Tags
3D Action Action_Localization Action_Recognition Activity Adversarial Agent Attention Autonomous Bert Boundary_Detection Caption Chat Classification CNN Compressive_Sensing Contour Contrastive_Learning Deep_Learning Denoising Detection Dialog Diffusion Drone Dynamic_Memory_Network Edge_Detection Embedding Embodied Emotion Enhancement Face Face_Detection Face_Recognition Facial_Landmark Few-Shot Gait_Recognition GAN Gaze_Estimation Gesture Gradient_Descent Handwriting Human_Parsing Image_Caption Image_Classification Image_Compression Image_Enhancement Image_Generation Image_Matting Image_Retrieval Inference Inpainting Intelligent_Chip Knowledge Knowledge_Graph Language_Model Matching Medical Memory_Networks Multi_Modal Multi_Task NAS NMT Object_Detection Object_Tracking OCR Ontology Optical_Character Optical_Flow Optimization Person_Re-identification Point_Cloud Portrait_Generation Pose Pose_Estimation Prediction QA Quantitative Quantitative_Finance Quantization Re-identification Recognition Recommendation Reconstruction Regularization Reinforcement_Learning Relation Relation_Extraction Represenation Represenation_Learning Restoration Review RNN Salient Scene_Classification Scene_Generation Scene_Parsing Scene_Text Segmentation Self-Supervised Semantic_Instance_Segmentation Semantic_Segmentation Semi_Global Semi_Supervised Sence_graph Sentiment Sentiment_Classification Sketch SLAM Sparse Speech Speech_Recognition Style_Transfer Summarization Super_Resolution Surveillance Survey Text_Classification Text_Generation Tracking Transfer_Learning Transformer Unsupervised Video_Caption Video_Classification Video_Indexing Video_Prediction Video_Retrieval Visual_Relation VQA Weakly_Supervised Zero-Shot