Paper Reading AI Learner

SynCellFactory: Generative Data Augmentation for Cell Tracking

2024-04-25 08:51:59
Moritz Sturm, Lorenzo Cerrone, Fred A. Hamprecht

Abstract

Cell tracking remains a pivotal yet challenging task in biomedical research. The full potential of deep learning for this purpose is often untapped due to the limited availability of comprehensive and varied training data sets. In this paper, we present SynCellFactory, a generative cell video augmentation. At the heart of SynCellFactory lies the ControlNet architecture, which has been fine-tuned to synthesize cell imagery with photorealistic accuracy in style and motion patterns. This technique enables the creation of synthetic yet realistic cell videos that mirror the complexity of authentic microscopy time-lapses. Our experiments demonstrate that SynCellFactory boosts the performance of well-established deep learning models for cell tracking, particularly when original training data is sparse.

Abstract (translated)

细胞追踪在生物医学研究中仍然是一个关键但具有挑战性的任务。由于深度学习在为此目的的全面且多样化的训练数据集的可用性方面往往被低估,因此深度学习在此任务上的全部潜力常常未被充分利用。在本文中,我们提出了SynCellFactory,一种生成细胞视频的增强方法。SynCellFactory的核心是ControlNet架构,该架构已通过在风格和运动模式上合成细胞图像来提高其准确性。这种技术能够创建与真实显微镜时间间隔复杂性相仿的合成细胞视频。我们的实验结果表明,SynCellFactory能够显著提高已有的深度学习模型在细胞追踪方面的性能,特别是当原始训练数据稀疏时。

URL

https://arxiv.org/abs/2404.16421

PDF

https://arxiv.org/pdf/2404.16421.pdf


Tags
3D Action Action_Localization Action_Recognition Activity Adversarial Agent Attention Autonomous Bert Boundary_Detection Caption Chat Classification CNN Compressive_Sensing Contour Contrastive_Learning Deep_Learning Denoising Detection Dialog Diffusion Drone Dynamic_Memory_Network Edge_Detection Embedding Embodied Emotion Enhancement Face Face_Detection Face_Recognition Facial_Landmark Few-Shot Gait_Recognition GAN Gaze_Estimation Gesture Gradient_Descent Handwriting Human_Parsing Image_Caption Image_Classification Image_Compression Image_Enhancement Image_Generation Image_Matting Image_Retrieval Inference Inpainting Intelligent_Chip Knowledge Knowledge_Graph Language_Model LLM Matching Medical Memory_Networks Multi_Modal Multi_Task NAS NMT Object_Detection Object_Tracking OCR Ontology Optical_Character Optical_Flow Optimization Person_Re-identification Point_Cloud Portrait_Generation Pose Pose_Estimation Prediction QA Quantitative Quantitative_Finance Quantization Re-identification Recognition Recommendation Reconstruction Regularization Reinforcement_Learning Relation Relation_Extraction Represenation Represenation_Learning Restoration Review RNN Robot Salient Scene_Classification Scene_Generation Scene_Parsing Scene_Text Segmentation Self-Supervised Semantic_Instance_Segmentation Semantic_Segmentation Semi_Global Semi_Supervised Sence_graph Sentiment Sentiment_Classification Sketch SLAM Sparse Speech Speech_Recognition Style_Transfer Summarization Super_Resolution Surveillance Survey Text_Classification Text_Generation Tracking Transfer_Learning Transformer Unsupervised Video_Caption Video_Classification Video_Indexing Video_Prediction Video_Retrieval Visual_Relation VQA Weakly_Supervised Zero-Shot