Embedding-based retrieval is attractive for long sequence collections because each item can be encoded once and searched by nearest-neighbor ranking. The difficulty is that the objects being indexed are often observed under a noncanonical clock: cardiac cycles stretch with rate, speech changes with tempo, and sensor traces reach comparable states at different speeds. This paper studies a specific source of instability in patch-based encoders for this regime. If patch boundaries are chosen from signal geometry, then the tokenization can change under the same temporal deformation that the representation is expected to tolerate. We propose GeoPatch, a fixed-scaffold patch encoder that keeps token support independent of geometry and uses slope, curvature, acceleration, affine-residual, and confidence descriptors only as continuous conditioning variables. The design turns boundary variation into feature modulation: geometry can change the embedding through a controlled pathway, but it cannot change the number, order, or support of local tokens. We formalize this distinction through a mechanism-level stability analysis that separates boundary drift, affine timing variation, confidence-weighted geometry perturbation, and retrieval-margin effects. The same local tokens support global embedding retrieval and late-interaction scoring, so the scoring rule can be matched to the evaluation protocol. Across ECG, speech, and multivariate time-series retrieval tasks, GeoPatch improves early-rank retrieval under timing variation while exposing a clear trade-off between local surface matching and strict non-overlap retrieval.
https://arxiv.org/abs/2609.36809
Token compression combines content from several positions, yet rotary position embeddings usually assign the merged token one coordinate. We ask what positional information must survive later merges. Aperture stores Fourier moments of the token's weighted support at the model's rotary frequencies. We prove that these moments have minimal real dimension among continuous states sufficient for the selected expected rotary interactions. Represented mass makes updates additive; attention normalisation remains a separate readout choice. Uniform intervals give a centre rotation times a sinc gain. We characterise when centres determine interval widths and construct matched examples where they do not. Numerical checks verify the weighted-support implementation. In trained temporal readers, compression transfer varies with gain calibration and feature placement. In a prespecified native video question-answering comparison, stored support reaches $65.63\%$ accuracy versus $67.12\%$ for the deployed merging rule. These results separate exact positional preservation under compression from downstream benefit.
https://arxiv.org/abs/2609.36781
Benefiting from transferable visual-textual alignment, CLIP has been widely adopted for class-incremental learning (CIL). However, existing learners either repeatedly update components shared across tasks, leading to knowledge overwriting, or overly isolate new-task updates, hindering the reuse of CLIP's transferable knowledge and limiting plasticity. Moreover, the text-based or bimodal classifier designs still fail to effectively integrate complementary information from the visual and textual modalities. To address these challenges, we introduce DuLBE, which couples dual-mode low-rank learning with a bridge-prototype ensemble classifier for exemplar-free CIL. DuLBE allocates two visual low-rank update modes according to the gradient demand and uses gradient routing to coordinate them: a compact and rewritable shared mode is selected from historically occupied visual directions to reuse transferable knowledge, while residual modes provide low-interference channels for task-specific variations. Building on the resulting stable inter-modal structure, we further construct geodesic bridges between visual prototypes and text embeddings on the unit hypersphere, and ensemble reliable bridge prototypes to compensate for the modality-gap limitations of textual decision boundaries. Extensive experiments under multiple settings show that DuLBE achieves state-of-the-art CIL performance while retaining the high parameter efficiency of low-rank tuning.
https://arxiv.org/abs/2609.36759
Visual reprogramming adapts pretrained models to downstream tasks by modifying their input and output interfaces while keeping the backbone fixed. In vision-language models, existing methods mainly rely on intra-class prompt aggregation and do not explicitly model relationships among classes. However, fine-grained categories often exhibit highly overlapping attribute descriptions and strong inter-class correlation in the text embedding space, where discriminative cues lie in subtle low-variance components. We propose Reparameterized Inter-Class Visual Reprogramming (RVP), a structured framework that aggregates multiple text prompts within each class and applies residual correction across classes. We also show that CLIP-based visual reprogramming with input-independent linear output aggregation can be expressed as a linear mapping from frozen image embeddings to downstream logits, and use this view to design a structured reparameterization that models shared semantic components and class-specific differences. RVP uses only a single visual prompt and can be reparameterized at inference into a frozen backbone followed by a linear classifier, incurring nearly zero computational overhead. Across 11 few-shot classification benchmarks and four CLIP backbones, RVP consistently improves over prior visual reprogramming methods with comparable or better inference efficiency.
https://arxiv.org/abs/2609.36680
Structural reasoning, the ability to recognize and make inferences over the relational structure between objects and concepts, is a hallmark of human cognition, yet prevailing methods often collapse relational topology into flat embeddings, cannot discover hidden structure and lack interpretability. We introduce Neural Structural Reasoner (NSR), a brain-inspired network that preserves relational structure directly in the connectivity and dynamics of coupled neuronal populations. NSR draws inspiration from three biological mechanisms: multi-layered architecture for encoding hierarchical knowledge, stable representations of entity and concepts, and path integration for input-driven state inference. At query time, NSR parallelizes computation over candidate relational structures and leverages confidence-weighted scores to perform link prediction. Across standard knowledge-graph benchmarks, NSR achieves competitive accuracy without leading on every dataset, and has lower reported training times than several neural baselines. Because reasoning is implemented through sequences of human-readable neuron activations, NSR affords native interpretability by tracking intermediate inference steps. The model further extracts latent relational hierarchies and compositional rules, demonstrating the brain-inspired architecture as an effective, efficient, and highly interpretable substrate for structural reasoning.
https://arxiv.org/abs/2609.36620
Dense retrievers decide which documents reach users and the language models that use them, yet they are typically evaluated with neutral queries. We ask whether the identity signals that real users express in their queries---political ideology and dialect---bias what a retriever returns. We design evaluations in two domains, political news and consumer-health questions, each pairing a controlled synthetic set that varies only the identity signal with naturalistic queries. Across five dense retrievers and a sparse baseline, every retriever (i) retrieves articles that align with the query's own political lean and (ii) performs worse for questions written in African American Language (AAL) than in White Mainstream English (WME). Two analyses tie these gaps to queries' identity signals beyond surface vocabulary: partialling out an aggregate lexical-asymmetry score leaves the synthetic gaps largely intact, and linear probes recover lean and dialect from the retrievers' query embeddings beyond token-level features. Left unaddressed, such retrieval biases risk contributing to polarization and reinforcing the health disparities already faced by AAL speakers. Code is available at this https URL.
https://arxiv.org/abs/2609.36534
Several tonal pitch spaces and computational models have been proposed to analyze tonal structure in Western tonal music, many of them grounded in principles from music theory and used to support tonal analysis with important implications for tonal tension. In parallel, data-driven methods such as skip-gram have been used to learn chord embeddings from symbolic corpora, but their ability to recover tonal structure and its relation to tonal tension remains underexplored. In this work, we investigate how skip-gram chord embeddings reflect tonal structure and whether they provide a useful basis for analyzing structural aspects of tonal tension. Using chord sequences with and without transposition-based augmentation, we evaluate the learned spaces from geometric, functional, and tension-related perspectives. We show that augmented embeddings exhibit strong transposition equivariance, recover a clear circle-of-fifths structure, and support interpretable shifts between key-related regions of the learned space. We then derive embedding-based measures from chord-to-key distance and contextual chord-distance relations, and show that they capture meaningful aspects of tonal tension structure through correspondence with matched tonal measures and moderate alignment with human tension profiles. Across analyses, transposition-based augmentation generally improves the stability, tonal coherence, and interpretability of the learned space.
https://arxiv.org/abs/2609.36460
Dense retrieval, the key component of Retrieval Augmented Generation (RAG), retrieves the most relevant documents by comparing dense vector representations of queries and passages from a large corpus. In privacy-sensitive applications, the server observes the query and controls which evidence is returned, creating both confidentiality and integrity risks. We formulate private dense retrieval as providing query privacy and retrieval integrity against a malicious server, and develop a two-round cryptographic protocol that provides both guarantees. Our protocol reduces private and verifiable retrieval to multiplication of a committed matrix by an encrypted vector and uses low-bit quantization to make this computation practical. We evaluate the resulting trade-off between cryptographic cost, retrieval quality, and downstream RAG accuracy across six embedding models, four language models, and corpora of up to 2.68 million passages. Our results show that, with a clipped quantizer, three-bit quantization largely preserves retrieval quality and downstream accuracy, while a private query over a corpus the size of a clinical reference requires one to three minutes of server time. These results suggest that private dense retrieval is already practical for moderately sized, privacy-sensitive corpora when minute-scale latency is acceptable.
https://arxiv.org/abs/2609.36376
Large foundation models have been introduced with the promise of efficient adaptation to downstream tasks. Yet, under limited supervision, MLLMs, an important class of large foundation models, remain challenging to adapt to various downstream tasks. Adaptation typically relies either on MLLM parameter fine-tuning or on training neural-based decoders. Both approaches struggle under limited supervision, while fine-tuning additionally requires access to model parameters, which is often unavailable for closed-source models. We introduce AdaKerNet, a novel learnable task-adaptive neural kernel decoder. AdaKerNet is fully agnostic to the parameters of the underlying MLLM and operates solely on its (frozen) rich representations obtained from the diverse available modalities. AdaKerNet relies on (i) a set of learnable, Lipschitz-controlled multimodal features derived from these MLLM representations; (ii) a reference kernel that provides a soft structural prior on those features; and (iii) a lightweight nonlinear neural predictor that adaptively deforms that structure. Learning the kernel representation and the neural predictor jointly within a unified optimization framework allows AdaKerNet to capture features and geometric relationships relevant to the downstream task. Numerical tests across four MLLMs: BLIP-2, LLaVA-1.5, Qwen2.5-VL, and Gemini Embedding 2, and multimodal inputs spanning text, audio, images, and tabular measurements demonstrate significant and consistent improvements over direct MLP, attention-, autoencoder- and kernel-based decoders, across a range of scarce-label budgets, with average error reduction of up to 41% across baselines. These results establish AdaKerNet as an effective approach for prediction from frozen multimodal representations in the scarce label regime. Additional structural ablations highlight the complementary contributions of AdaKerNet's components.
https://arxiv.org/abs/2609.36368
Graph-based approximate nearest neighbor search (ANNS) is widely used for large-scale semantic search. Its indices are constructed primarily based on geometric relationships among embeddings of an input dataset (e.g., documents or images), rather than explicitly optimizing for semantic relevance. However, when using these indices for downstream query retrieval, performance is evaluated based on the semantic relevance of the retrieved results to the query. This creates a fundamental "geometry-semantic" mismatch between how the indices are constructed and how their retrieval results are evaluated. While existing LLM-based reranking methods can partially mitigate this mismatch at query time, they leave this underlying structural problem in the graph unresolved. We therefore propose LLM-Guided Graph Pruning (LGP), a general framework that addresses this mismatch directly by leveraging LLM reasoning to refine an existing ANN graph index itself. LGP identifies structurally "low-value" neighbors of nodes and replaces them with LLM-selected alternatives that provide useful semantic information while retaining desired geometric structures of the original graph, including sparsity and efficient navigability. Experiments on representative semantic retrieval benchmarks show that LGP consistently improves end-to-end retrieval performance over both vanilla greedy graph search and LLM-based reranking across widely used graph-based ANN indices such as DiskANN and HNSW.
https://arxiv.org/abs/2609.36359
Latent world models rely on representation geometry for planning, yet regularizing the latent marginal alone does not determine the state-to-state relationships used for action selection. We show that this can cause planning-relevant novelty structure to be weakened as representations are transformed into the final latent used by the planner. We introduce Aligned Transport of Latent Structure (ATLAS), a training objective that explicitly preserves relational geometry while calibrating the global latent distribution. ATLAS transfers normalized pairwise structure from an informative encoder representation to the planning latent and uses Wasserstein embedding matching (WEMReg) to calibrate its marginal through one-dimensional Wasserstein-2 transport. Our analysis shows that relational preservation and marginal calibration impose non-redundant constraints, and connects finite-candidate planning stability to relational distortion, latent-scale mismatch, and prediction error. Instantiated in LeWM, ATLAS improves mean goal-reaching success across PushT, TwoRoom, and OGBench-Cube on both lower- and higher-novelty evaluation subsets, with the largest gain on higher-novelty TwoRoom episodes. Representation and rollout diagnostics further show stronger novelty-related structure in the planning latent, improved marginal calibration, and lower multi-step prediction error. Together, these results highlight preservation of planning-relevant latent geometry as an important ingredient for reliable world-model planning. Code is available at this https URL.
https://arxiv.org/abs/2609.36333
Retrieval-augmented generation (RAG) hands the user's query to whoever hosts the corpus. We propose PILLAR, a Privacy-Preserving RAG (PPRAG) system based on Private Information Retrieval (PIR) in which a client utilizes the k documents most similar to their query from a server-held and publicly known corpus to respond to their query, while the server learns nothing about the query, either its terms or its access pattern. Prior PPRAG constructions rely on dense retrieval alone, translating approximate nearest-neighbor search into many query-dependent rounds of PIR, and pay for it in both latency and retrieval quality. PILLAR instead performs private hybrid retrieval in two stages. A sparse stage issues a small, fixed number of PIR queries against a carefully designed index of precomputed BM25 scores, filtering the corpus down to candidates that share terms with the query without the server ever seeing which terms these are. A dense stage then fetches only those candidates' document embeddings and re-ranks them locally, avoiding the many costly PIR queries that private dense retrieval typically requires. We instantiate PILLAR with two protocols that trade latency against retrieval quality, each built on a different private rendering of lexical search. PILLAR-Bin bins posting lists into a hash table and is a single-round design that achieves lower latency than state-of-the-art private retrieval schemes. PILLAR-Tree turns block-max pruning into an oblivious tree traversal combined with cuckoo hash tables and achieves the highest retrieval quality at lower latency than state-of-the-art schemes.
https://arxiv.org/abs/2609.36326
The shallow embedding of higher-order modal logic in classical higher-order logic, used in Benzmüller and Scott's Notes on Gödel's and Scott's variants of the ontological argument (2025), reaches beyond the modal object language of the arguments: its property quantifiers range over terms that may also express nominals and satisfaction operators of hybrid logic, and a proof using one proves a theorem of the embedding that need not be one of the modal logic. That the framework affords this is not new, and whether a result is one of the modal logic can be settled in two ways: by replaying it in an explicit proof calculus, done by hand for chosen theorems, or by analysing the proofs the embedding itself produces, which this article does mechanically, for every result at once. Every statement the Notes prove has a proof inside the object language: 294 written out by hand and machine-checked, none using a nominal. The proofs the Notes themselves give instantiate no nominal either; what the detector flags there are terms a prover substituted. The three questions the Notes leave open are settled too, and without nominals, but the conjunction axiom has to be emended: generalised in the Notes to Gödel's "any number of summands", it covers the conjunction of no properties, and of one; the empty one alone settles all three, and the two together yield what a separate axiom of Gödel's is for. This article restricts the conjunction axiom to at least two different conjuncts, the reading Gödel's footnote suggests, and the questions are settled again, by proofs that turn on the argument rather than a degenerate instance. The restriction holds of the object language only: with a nominal the axioms make the accessibility relation the identity and the readings coincide. Every theorem is verified in Isabelle/HOL and independently in Lean 4; the countermodels are Nitpick's, certified by the build.
https://arxiv.org/abs/2609.36279
A goal that is close in space can be far away in time. Obstacles, terrain, and the agent's own capabilities determine how long it takes to get there. Yet, critics in contrastive and survival reinforcement learning do not measure the distances in their representation space in units of time. We therefore introduce ChronoSRL, which gives the critic's embeddings an explicit temporal geometry. The distance between state-action and goal embeddings is trained to match the time that the agent takes to reach the goal (goal-reaching time), while goals that were not reached, and goals from other trajectories, are pushed at least one discount horizon away. Furthermore, reaching a goal quickly once does not mean that reaching it is reliable in general, so the policy should not follow the temporal distance directly. Instead, we build on survival reinforcement learning and predict from our temporal embeddings not only the full distribution of goal-reaching times but also the time spent near the goal. Thereby, the policy is trained to favor actions that reach the goal sooner and more reliably and that keep the agent near it. ChronoSRL learns faster and reaches higher performance than contrastive, action-chunked contrastive, and survival reinforcement learning baselines on seven standard locomotion and navigation benchmarks, even with much smaller networks. To test the limits of self-supervised reinforcement learning, we introduce velocity tracking, goal-position reaching, and box climbing tasks with a quadruped robot in a realistic sim-to-real locomotion setup, and show how the shaping terms that are typical for robotics can be naturally incorporated into our framework. ChronoSRL is the only one of the tested self-supervised reinforcement learning methods that learns to stay at the commanded velocities and goal positions, and climbs the highest boxes.
https://arxiv.org/abs/2609.36238
Next-latent prediction fits a map from the current embedding to the next one. LeNEPA carries this objective to time series, replacing the stop-gradient of next-embedding prediction with the isotropy penalty of LeJEPA. A world model is a transition kernel that can be rolled out. The one-step regression identifies a conditional mean, and a mean is a kernel only in special cases. For a linear-Gaussian Markov latent, the mean transition and the innovation covariance are fixed by the one-step problem, and the open-loop squared error at horizon $K$ equals the trace of the sum of the pushed-forward innovation covariances. That error grows with $K$ after the one-step fit is exact. If the conditional mean is nonlinear, composing it is not the multi-step conditional mean. If the observation is a non-injective function of a Markov state, a memoryless one-step map does not determine future observations, while a short window can. An isotropy penalty is a function of the embedding marginal, so its partial derivative in the transition weights is zero. On a scalar autoregression with coefficient $0.9$, the one-step mean squared error is $0.998$ and the $16$-step open-loop error is $5.10$. On a hidden rotation, an eight-step window reaches $16$-step error $0.056$, while the current scalar alone reaches $0.778$. Raising the isotropy weight from $0.1$ to $10$ leaves eight-step latent error inside $[0.78,0.85]$ on three seeds.
https://arxiv.org/abs/2609.36227
A deeper understanding of brain function requires a precise, structured characterization of this http URL, extracting behavioral representations from video in a form suitable for scientific analysis remains a fundamental challenge. Many prior studies represent behavior via pose estimation or nonlinear video embeddings. However, pose tracking discards rich information beyond predefined keypoints, while nonlinear video embeddings lack interpretability. We address this limitation with SABLE (Sparse-view Animal Behavior Latent Embeddings), a self-supervised framework that leverages a geometric inductive bias to learn behavior this http URL augmenting a multi-view transformer with priors from monocular depth and pose estimation, SABLE reconstructs 3D animal behavior from extremely sparse views while learning explicit 3D latent structure. Without ground-truth 3D labels, it reliably recovers 3D behavior from two-view videos, whereas state-of-the-art (SOTA) methods fail or yield degenerate solutions. Across the International Brain Lab and Cheese3D datasets, we demonstrate that SABLE learns 3D representations that match or exceed prior SOTA performance in neural encoding and decoding. Once pretrained across animals, SABLE serves as an off-the-shelf model that generalizes zero-shot to unseen animals without animal-specific calibration or retraining. Our method establishes 3D-aware video embeddings that capture complex behavior, opening new avenues for studying brain-behavior relationships.
https://arxiv.org/abs/2609.36217
Parallel speculative drafting generates multiple candidates in one backbone pass, but independent token selection can produce inconsistent continuations that shorten the accepted prefix. Existing methods mostly leave conditional decoding to a lightweight module after the backbone, which limits the flow of predecessor information to successors. Our analysis of DFlash shows that early positions already form recoverable predictions in shallow layers, and that accurate adjacent predecessors help successors more when they enter earlier. We therefore propose DSpine, a drafter with causal conditioning injection throughout the backbone: at every layer, gated adjacent injection writes each predecessor's predicted feature into its successor, so the causal conditioning chain unfolds over network depth while all positions update in parallel. A unified transfer space built from the target model's output embeddings unifies layer-wise injection with predecessor-conditioned decoding, and layer-wise output-embedding supervision promotes the formation of predicted features in shallow layers. Fused kernels and a transition cache execute both efficiently in parallel within SGLang. Across seven math, code, and chat benchmarks, DSpine achieves the longest acceptance length at both temperatures on Qwen3-4B and Qwen3-8B. At temperature zero on Qwen3-8B, it raises the seven-benchmark mean from DFlash's 3.77 to 4.82 (+27.8%); in SGLang serving tests, it delivers 23.3% higher throughput than DFlash on average.
https://arxiv.org/abs/2609.36173
Contrastive vision-language models learn shared embedding spaces by aligning matched image-text pairs, yet their representations remain separated by a modality gap. Prior work reports divergent effects of modifying this gap: reducing it can improve zero-shot classification and cross-modal alignment, whereas removing gap-related structure can degrade image-text retrieval. In this paper, we provide a unified geometric explanation for these task-dependent effects. Across CLIP and SigLIP encoders, we find that a single dominant direction captures 94.4-99.9% of the squared norm of the image-text mean separation, revealing that the mean-separation component is approximately rank-one. A decomposition of the similarity score then identifies three task-specific roles. In zero-shot classification, query-side fixed gap-offset subtraction is exactly equivalent to an additive class bias. In standard cross-modal retrieval, projecting out the gap direction and renormalising residuals discards candidate-specific norm information, inducing a multiplicative ranking distortion; a geometry-derived exponent tracks the grid-search optimum (Spearman rho = 0.93) and restores performance in some settings, although the gains transfer unevenly. In mixed-modal retrieval, the gap direction sorts candidates by modality; its removal can improve cross-modal ranking, unlike random or non-gap controls. Residual semantic structure after removal defines the limits of the rank-one account. Together, these results explain why gap modification can improve, degrade, or restore performance across downstream settings. By clarifying when and why gap modification changes model behavior, this account provides a principled basis for selecting gap interventions in similarity-based vision-language systems across evaluated downstream tasks.
https://arxiv.org/abs/2609.36101
Sensor networks and radars can deliver signals as organized sets, e.g. ordered signals, signals describing range cells within a grid or signals perceived as graph nodes. Within such sets, individual signals may be characterized by distinct sampling parameters. This paper investigates organized signal sets neural network encoders. In the context of this work, the purpose of such encoders is to project heterogeneously sampled signal sets into an arbitrary fixed-size vectors space. This new representation space is designed so that signal sets can be processed as vectors rid of sampling differences to allow for arbitrary topology-aware processing with no signal processing constraints. Within this representation space designed to reduce the influence of heterogeneous sampling parameters, the relevance of signal sets representations is evaluated by considering signal sets discrimination potential with a focus on waveforms separation. The encoding and embeddings discrimination experiments conducted rely exclusively on synthetic complex-valued radiofrequency signals.
https://arxiv.org/abs/2609.35934
Prompt injection against LLM agents becomes much stronger when the injected instruction is wrapped in the model's own chat template. A forged template marker such as <|im_start|> can reach the model either as a single reserved control token or as a sequence of ordinary subword tokens. The two decode to exactly the same text, and because tokenization runs on the server, the defender rather than the attacker decides which one the model receives. We use this to measure how much of the injected instruction's authority comes from the reserved token's learned representation. Encoding the forged markers as subwords, with the text held fixed and a control for the extra tokens this adds, lowers attack success on the InjecAgent benchmark by 39 to 66 percentage points on three of four open-weight families, and the gap carries over to multi-turn agent tasks in AgentDojo. On Qwen3-8B the gap is 8 points, because without reserved ids the model still recognises the forged turn from its text by reasoning; suppressing the reasoning block widens the gap to 50. The authority sits in the single learned vector at the marker position: the mean of the marker's subword vectors does not reproduce it, the vector of the nearest ordinary token restores the attack on Llama-3.1, and an adaptive attacker who searches for non-reserved markers finds such embedding neighbours on three of four families. In every base and instruction-tuned pair we test, instruction tuning strengthens the model's preference for reserved markers. The standard mitigation, a tokenizer option that encodes special tokens as ordinary subwords, applies only to tokens a configuration declares special, so in 33 of 67 distinct tokenizer configurations, covering 255 of the 400 most-downloaded chat models on Hugging Face, it leaves intact the tool-protocol tokens through which agents read untrusted tool output, and the gap persists on that channel.
https://arxiv.org/abs/2609.35932