Long-context models read a novel the way a person reads a printout: one token after another, in narrative order, with the whole history competing for a fixed budget of attention. A detective does not work that way. They sort what happened when, and they keep a map of who relates to whom, so a clue from chapter one can meet a question asked at the end of the book. We test whether a frozen knowledge graph can give a small local model that same freedom. Thirty detective novels and 234 multiple-choice questions are answered by one fixed qwen3.5:9b reader under nine conditions: five graph routes, a recent-window baseline, whole-book compression, ordinary vector retrieval, and a question-only control. The strongest graph route reaches 53.85% (126/234) against 46.15% for the recent window, 51.28% for compression, 51.71% for vector retrieval and 40.17% for question-only. On the subset that no model can answer without the book, the graph route reaches 42.86%. None of the fifteen graph-baseline contrasts survives Holm correction, so we present the result as exploratory evidence about a design. Two structural findings survive scrutiny better than the headline number: annotated evidence concentrates in the topological core of these graphs (2.35x enrichment, pooled), and the two graph-building pipelines differ so much in annotation coverage (16% versus 73% of clue paragraphs) that pooled accuracy alone would hide which bottleneck is being measured.
https://arxiv.org/abs/2609.22939
Software is a first-class scientific object, yet validated links between source code and the scholarly record remain largely absent from the Linked Open Data (LOD) cloud, isolating archived artefacts from semantic discovery. This paper presents an end-to-end reconciliation pipeline that harvests, validates, and models publication-to-repository pairs from sources where the link between a paper and its source code is explicit and editorially verified: the software-centric journals JOSS, SoftwareX, and IPOL, together with the reproducibility reports of the SIGMOD Availability and Reproducibility Initiative (ARI). This yields a curated corpus of 4,397 $\langle$DOI, repository-URL$\rangle$ pairs. We design two distinct application profiles grounded in Wikidata classes (one for scholarly articles, one for software instances) aligned with the this http URL and CodeMeta vocabularies. This architectural separation enables rule-based reconciliation at two granularities: lightweight, inline publication references or standalone, first-class Wikidata software nodes equipped with SWHIDs, Software Heritage's content-addressed identifiers. A read-only lookup against Wikidata shows that only 82 of the harvested repositories were already modelled there; human-reviewed batches have since created 4{,}182 new software items cross-linked to their articles. We further show that payloads of the emerging COAR Notify protocol, an external effort we do not develop, map natively onto our input format, so the same backend could later serve a live enrichment stream. Our core contribution is a pair of application profiles that turn Wikidata into a connector between the scholarly record and archived source code; we openly release all code, application profiles, and harvested datasets.
https://arxiv.org/abs/2609.21667
Introduction. Open collaborative knowledge graphs such as Wikidata increasingly ground agentic artificial intelligence, information retrieval, and language modeling systems, making systematic auditing of their demographic representation and overall equity a research imperative. Methods. Herein, we present an open-source auditing platform that ingests over 10 million statement bindings representing over 6 million humans on Wikidata via QLever, and evaluates representation of gender, sexual orientation, geography, birthplace urbanicity, ethnicity, multilingual coverage of labels, descriptions, and aliases, occupation, and select intersectional pairs of these entities. It does so by making use of Chi-square goodness-of-fit tests, 95% Wilson-score confidence intervals, and disparity ratios, in light of Rubin's missingness taxonomy. Results. Women accounted for 28.71% (CI +/-0.04) of all humans in Wikidata with a stated gender. 38.26% of humans had a citizenship statement, with Western Europe and North America (WENA) representing approximately 53% of such statements. Among 1.8 million birthplaces that could be classified, rural birthplaces were observed in 2.48% of cases (in comparison to 27.4% global baseline). Fewer than 1.2% of entities carried an ethnicity statement, and non-English Wikidata descriptions covered 18.2% of items. Discussion. Our findings reveal significant missingness across the evaluated axes. Ethnicity and sexual orientation were the most critically under-documented (missing statements) while rural birthplaces and non-WENA citizenship were the most underrepresented.
https://arxiv.org/abs/2609.22375
Because of its collaborative nature, Wikidata suffers from errors, in- consistencies, and excessive complexity, such as redundant classes, ambiguity between instances and classes, wrong taxonomic paths, and type constraint violations. The manual curation of these issues is infeasible at scale. To address these challenges, we introduce WiCleanData, a refined version of Wikidata with a consistent tax- onomy and free from type constraint violations. Specifically, we have designed an automated pipeline that first cleans the taxonomy with language model assistance, then simplifies type constraints by hierarchical aggregation, and finally filters facts accordingly. The resulting knowledge graph, free from any type violation, is made publicly available via a Web interface, enabling easy exploration and downstream applications.
https://arxiv.org/abs/2609.20057
We introduce PersonalAI 2.0 (PAI-2), a novel framework designed to enhance LLM-based systems through integration of external knowledge graphs (KGs). The proposed approach addresses key limitations of existing Graph Retrieval-Augmented Generation (GraphRAG) methods by incorporating a dynamic, multistage query-processing pipeline. The central point of the PAI-2 design is its ability to perform adaptive, iterative information search, guided by extracted entities, matched graph vertices, and generated clue-queries. An evaluation conducted on five benchmarks (Natural Questions, TriviaQA, HotpotQA, 2WikiMultihopQA, and MuSiQue) demonstrates an improvement in the factual correctness of generated answers compared to analogue methods (LightRAG, RAPTOR, HippoRAG 2, and PAI-1). PAI-2 achieves a 9% average gain by LLM-as-a-Judge on the 2WikiMultihopQA and MuSiQue benchmarks, and attains accuracy comparable to HippoRAG 2 on the TriviaQA and HotpotQA benchmarks, reflecting its effectiveness in reducing hallucination rates and increasing precision. We show that enabled search plan enhancement mechanism gain 18% boost compared to disabled one by LLM-as-a-Judge across five benchmarks. In addition, an ablation study reveals that PAI-2 achieves SOTA result on the MINE-1 benchmark, obtaining an 89% information-retention score with LLMs in the 7--15B tiers. Collectively, these findings underscore the potential of PAI-2 to serve as a reusable component for personalized AI applications, which require scalable, context-aware knowledge-representation and reasoning capabilities. The source code of PAI-2 is available at the following link: this https URL.
https://arxiv.org/abs/2605.13481
Adaptive learning systems commonly formulate learning path planning as Exercise-Centric (EC) recommendation, where the next step is inferred from item-level interaction logs. Evaluating goal-oriented guidance additionally requires explicit learner goals and curriculum-scale prerequisites: learners with similar exercise records may need different paths toward their targets. We therefore study Knowledge-Centric (KC) personalized learning path planning, where a planner must reason over learner profiles, mastery states, and prerequisite knowledge structures to decide which textbook, unit, and concept should be studied next. To support this setting, we introduce PersonaPath, a benchmark that pairs 2,000 fine-grained learner personas with a hierarchical knowledge graph of 347 textbooks, 1,751 units, and 4,092 concepts across 77 subjects. We evaluate representative LLMs on PersonaPath. Results show that even the strongest LLM reaches only a 29.5% final pass rate in Basic Education, and that the main bottleneck lies in adaptivity, where no model exceeds 44.7% in tailoring paths to individual learners.
https://arxiv.org/abs/2609.18861
Biomedical knowledge graphs combine ontology-derived hierarchies with transversal associations among heterogeneous entities such as phenotypes, diseases, genes, proteins, and patients. This hybrid structure raises the question of whether hyperbolic embeddings, which naturally capture tree-like organization, remain useful beyond purely hierarchical graphs. We present a preliminary study of hyperbolic graph representation learning for Mendelian-disease differential diagnosis on a patient-integrated biomedical graph. Experiments on isolated ontology subgraphs show that hyperbolic models achieve strong performance in substantially lower dimensions than Euclidean baselines. We then evaluate the models on a link-prediction task that ranks candidate diseases for each patient. Results suggest that hyperbolic embeddings can exploit biomedical hierarchical structure while supporting diagnostic reasoning over heterogeneous patient-level graphs.
https://arxiv.org/abs/2609.18481
Large language models (LLMs) suffer from a long-tail deficit: culturally specific facts, particularly those concerning underrepresented regions such as Latin America, appear too rarely in pretraining corpora to be reliably memorized. Retrieval-Augmented Generation (RAG) addresses this by grounding generation in external text, but structured alternatives such as Knowledge Graphs (KGs) offer tighter control over what enters the context, along with potential gains in explainability and updatability. We benchmark Graph-RAG against standard RAG on LatamQA, a culturally grounded multiple-choice dataset spanning eight thematic categories. The graphs are built end-to-end from Wikipedia articles with KGGen, a recent open-domain extractor, without manual curation in our main setting. G-Retriever is competitive with RAG and reduces the error of the base LLM by 72\% with a standard KG and 78\% with a benchmark-aware variant, the gap to RAG narrowing further as the graph is oriented toward task-relevant content. The trained projection transfers zero-shot to Portuguese without target-language fine-tuning, indicating multilingual reach.
https://arxiv.org/abs/2609.18317
An advanced retrieval-augmented generation pipeline is typically assembled from three or four independently operated systems: an approximate nearest-neighbour index, a full-text search engine, a graph database, and a relational document store. Each contributes its own deployment surface, configuration model, and failure modes, and the integration logic that binds them is written anew in every project. In this work, we present \textsc{Quanta}, an open-source Python library, which unifies dense vector search over 4-bit quantised embeddings, BM25 full-text retrieval, and knowledge-graph traversal behind a single retrieval API. Quanta makes two design commitments, which distinguish it from existing hybrid retrieval stacks. First, signals are combined by \emph{weighted reciprocal rank fusion} rather than by normalising heterogeneous scores onto a shared range, which we argue is ill-posed because such normalisations are query-dependent. Second, the graph is a \emph{candidate expander and not a relevance scorer}: traversal widens the candidate pool, and the newly admitted documents are re-scored by the dense indexes under an identifier allowlist, so structural adjacency determines what is considered while content evidence determines how it ranks.
https://arxiv.org/abs/2609.18248
The quest for new materials increasingly relies on predictive models and comprehensive simulations that span scales from atomic to macroscopic levels. However, essential data necessary for these models and simulations are often embedded in scientific literature as unstructured text, limiting reusability and posing challenges for researchers seeking to leverage existing knowledge effectively. While extracting structured data from unstructured text using large language models is gaining popularity, traditional methods typically generate key-value pairs data with straightforward schemas. In contrast, we introduce eolas, a modular pipeline that uses large language models to automatically transform scientific documents into knowledge graphs aligned with a specified ontology. We demonstrate eolas effectiveness in extracting useful information for scientists studying materials designed to endure the extreme temperatures and radiation levels found in fusion reactors. While a human expert might spend between thirty to ninety minutes extracting relevant data from an article, eolas can generate high-quality knowledge graphs in just a few minutes. These are presented in a tabular format with faceted navigation for easy human validation. Additionally, we introduce the first benchmark dataset designed to assess large language models capabilities in constructing knowledge graphs within the domain of irradiated materials. The analysis of 168 experiments using our dataset, various large language models and prompting techniques provides key insights that we summarize into practical guidelines for effectively extracting knowledge graphs aligned with an input ontology.
https://arxiv.org/abs/2609.17291
Generative AI promises natural language access to the massive numerical telemetry of data centers and Industry 4.0 installations, yet text-to-query and tool-using agents stay unreliable: even frontier models answer little more than half of real-world database questions, and far fewer of the multi-step, operational ones, because the LLM must compose how heterogeneous sources relate and hallucinates the relations, not just the fields. We propose symbolic separation: a deep agent reasons freely but may act on data only through an ontology-constrained Virtual Knowledge Graph with deterministic pre-execution validation. Unlike a tool API's interface contract, this domain-semantic contract turns a complex question into one validated graph traversal instead of LLM-inferred joins. Instantiated as the Neurosymbolic Deep Analyst and evaluated on 49.9 TB of superconputer telemetry against a rigid workflow and a non-symbolic ablation, it raises end-to-end task success from 43% to 86%, prevents silent data-integrity errors that no syntactic check catches, and cuts token cost by 2.4x, letting a smaller on-premise model outperform a larger one.
https://arxiv.org/abs/2609.17107
This paper introduces NeuroSymbEAD, a large-scale neuro-symbolic caption dataset featuring an ego-centric knowledge graph (KG) of static and dynamic objects annotated with classes, categories, heading directions, orientations, and distances from the ego-vehicle. These annotations are used on the KITTI-360 dataset to generate multilevel textual captions representing a lightweight version of an ego-centric scene map. Outdoor scene-map reconstruction, visual recognition, and object grounding establish baselines for driving common sense and traffic/scene understanding. For these purposes, natural language-based grounded captioning of objects and their complex relationships is a widely adopted contextual representation for indoor scene tasks. Neuro-symbolic representations have proven effective in handling structured information for various computer vision and language applications. Our data annotation pipeline allows the generation of varied map segments, populating simulated or real objects within the bounding boxes predicted by any 3D object detection network, and building hierarchical text captions. We benchmark our neuro-symbolic and ontological caption generation using pre-trained grounding and learned auto-regressive captioning networks. By converting 3D driving scenes into structured ego-centric language, NeuroSymbEAD provides a benchmark for vision-language and foundation models for traffic-scene explanation, 3D reasoning, and interpretable autonomous-driving perception.
https://arxiv.org/abs/2609.16919
Puns are a challenging form of figurative language that exploit phonetic similarity and semantic ambiguity to convey multiple meanings. Although large language models (LLMs) demonstrate strong language understanding capabilities, they still struggle with pun reasoning due to limited phonetic modeling and uncontrolled end-to-end generation. We propose \textbf{PunGraph}, a retrieval-enhanced knowledge graph framework for pun understanding. PunGraph constructs a phonetic-semantic lexical graph using the Unisyn phonetic dictionary, IPA and G2P representations, and WordNet definitions, and retrieves candidate words or senses to constrain LLM reasoning within a structured candidate space. We further introduce \textbf{WebPun}, a new large-scale dataset containing 5,730 annotated heterographic and homographic puns. Experiments on SemEval-2017 and WebPun show that PunGraph consistently improves the performance of small-scale LLMs and achieves competitive results against strong proprietary models. Further analysis shows that retrieval-guided phonetic and semantic constraints effectively reduce common reasoning errors in pun interpretation, highlighting the benefits of integrating structured knowledge with LLMs. We release our code and dataset at this https URL.
https://arxiv.org/abs/2609.16557
Research data repositories are essential infrastructure for scientific inquiry and for ensuring that datasets follow FAIR (Findable, Accessible, Interoperable, and Reusable) principles. However, repository reuse depends on the quality and completeness of geospatial and thematic metadata, which researchers generally provide voluntarily. Given limited curation resources, it is unsurprising that even Harvard Dataverse, the world's largest general-purpose research repository, contains many incomplete metadata records. Missing fields represent lost information and reduce interoperability. We find that datasets with more missing metadata receive fewer downstream citations and have fewer resolvable connections to other datasets. The implications are particularly important for geospatial datasets: only 0.3% of research datasets include a bounding box, and most represent archival points rather than complete geographic shapes. Our analysis shows that geospatial metadata helps connect concepts across disciplines. After embedding Harvard Dataverse datasets in a metadata knowledge graph, we find that datasets are twice as likely to connect across scientific disciplines through shared geospatial metadata as through keywords. This suggests that geographic metadata is a more reliable basis for cross-disciplinary interoperability than keyword vocabularies, which often remain discipline-specific. We train and fine-tune a small language model using datasets from Harvard Dataverse. Through geospatial metadata enrichment, we increase the share of datasets from different disciplines connected through metadata elements from 58.5% to 63.2%.
https://arxiv.org/abs/2609.16498
Large Language Model (LLM) applications often transfer domain concepts into the model's context informally, through prompt prose, schema dumps, and examples. We show that for database queries, data model concepts pass to LLMs more effectively through representations whose vocabulary terms carry declared, machine-readable semantics (controlled semantics). NLKGQ is a working system and reusable framework that does this for data modeled in a knowledge graph. A formal OWL ontology serves as the transfer mechanism, concentrating the meaning of the data into semantically precise tokens the model can use directly. In a single LLM call, NLKGQ places in the context a system prompt instructing on SPARQL, the complete domain OWL ontology, and a domain-specific prompt addition, together with the user's natural language query. The model then generates the SPARQL query directly, zero-shot. Where the native vocabulary of an existing database or federation of databases is opaque, a wrapper ontology substitutes clean terms and a runtime rewriter restores the native forms. Evaluating on DBLP-QuAD 2.0 showed that its scores depend on the graph snapshot, the endpoint used, and the wording of its machine-generated questions, so we propose DBLP-QuAD 3.1, which maintains the intent of 2.0 while making reference results deterministic, revising reference SPARQL where needed, and rewriting the natural language questions, with a frontier model, to state each reference query's intent clearly and completely. We evaluate on the DBLP-QuAD 2.0 benchmark (57.6% Match under deterministic re-scoring), DBLP-QuAD 3.1 (89.9% Match on 1,000 questions), SemOpenAlex (98% Match against a published baseline's 86% on the identical test set), and neuroimaging metadata (100%).
https://arxiv.org/abs/2609.14652
Multi-Hop Knowledge Graph Question Answering (KGQA) tasks require models to assemble relational evidence along paths in a KG to answer natural-language questions. However, existing KGQA systems typically focus on predicting the final answer without explicitly modeling or validating the intermediate reasoning steps, obscuring whether the correct answers arise from faithful multi-hop reasoning. To address this limitation, we re-frame multi-hop KGQA as a question-conditioned graph navigation problem. We refer to this formulation as THESEUS - Traceable Hop-wise Evidence SEarch in a Unified Semantics. In this setting, an agent receives a KG, a question, and a topic entity, and traverses a sequence of relations towards the answer, making the reasoning path explicit. To systematically study this formulation, we provide three key contributions. (i) We augment the existing KINSHIP and MQuAKE resources into navigation-ready KGQA datasets with annotated evidence paths and paraphrased questions. (ii) We design evaluation protocols to measure path fidelity, robustness to linguistic variation, and performance across multi-hop and multi-answer questions. (iii) We adapt established path-based KG completion agents - MINERVA, MultiHopKG, and SQUIRE - to operate on full question embeddings rather than symbolic single-relation queries, enabling their trajectories to be guided by natural-language semantics. Together, these contributions advance KGQA research toward systems where traceability is fundamental: answers are accompanied by explicit reasoning paths whose agreement with reference evidence can be systematically evaluated.
https://arxiv.org/abs/2609.14528
Temporal knowledge graph embedding (TKGE) models infer missing facts in knowledge graphs that evolve over time. Many existing models use a single geometric space, which can limit their ability to represent diverse relational patterns, or treat entity representations as static. We propose Biquaternionic Space with Complex-valued Attention (BSCA), a TKGE model that combines circular and hyperbolic rotations within a unified biquaternionic framework. A complex-valued attention mechanism adaptively fuses time-conditioned and relation-conditioned entity representations, allowing them to vary with temporal and relational context. Experiments on five benchmark datasets show competitive performance across datasets, with the largest improvement on GDELT: BSCA achieves an MRR of 52.1\%, compared with 38.1\% for the strongest baseline in our comparison.
https://arxiv.org/abs/2609.14279
Knowledge graphs are increasingly distributed across autonomous organizations that share an entity space but own disjoint subsets of relations, forming a vertical partition. Answering a multi-hop query may require combining facts from several silos, making the partitioning strategy a key data management decision that affects communication, indexing, load balance, and query latency. However, the costs associated with different partitioning strategies remain insufficiently studied. We formalize vertical partitioning as a design space and compare four strategies: semantic domain grouping, frequency-balanced partitioning, co-occurrence graph-cut partitioning, and random partitioning. We evaluate them using five metrics: communication cost, candidate index size, cross-silo path length, load balance, and end-to-end query latency. Three of the five prove to be determined by the graph and the silo count rather than by the partition, which reduces the design problem to two conflicting axes, cross-silo path length and load balance. Experiments on MetaQA and PathQuestion use a fixed federated knowledge graph question-answering architecture based on TransE embeddings and a frozen BERT encoder across three silo configurations. By keeping the learning model unchanged, we isolate the effect of partitioning and show that the trade-off between locality and balance holds only where each silo can hold several relations, weakening as the number of silos increases. The study provides practical guidance for deployments constrained by cross-silo reasoning or by silo load.
https://arxiv.org/abs/2609.13664
Knowledge graph question answering usually assumes that one system can reach the whole graph. In practice, facts are often held by organizations that share entity identifiers but own disjoint relation types, so no single party sees a complete reasoning chain. This poster presents the empirical findings of FedV-KGQA on multi-hop question answering over such vertically partitioned graphs. Each silo enriches its local graph and trains a knowledge graph embedding on its own triples. A server then concatenates the silo-specific entity views, anchors the projected question at the topic entity, and ranks candidates by similarity. Raw triples and relation embeddings never leave a silo. Comparing the FedV-KGQA experiments with one another yields three results. First, federated fusion recovers most of the centralized accuracy, while a single silo recovers little. Second, anchoring and enrichment matter more than the choice of embedding model. Third, the cheapest encoder depends on the target accuracy rather than on parameter count. This poster paper contributes that cross-experiment comparison, four design lessons drawn from it, and an interactive prototype that runs real inference and traces the full pipeline, per question, on released checkpoints.
https://arxiv.org/abs/2609.13661
Retrieval-Augmented Generation (RAG) has empowered Large Language Models (LLMs) to tackle knowledge-intensive tasks. However, navigating global, heterogeneous knowledge bases (large-scale knowledge graphs and text corpora) for complex reasoning remains a challenge. Existing methods typically employ reactive, graph-driven exploration strategies, which blindly follow graph topology without adapting to the question context or evolving exploration progress, and lack deep bidirectional synergy between graph and text. To address these limitations, we propose CoG (Cognition on Graph), a cognitive-inspired, training-free framework for adaptive knowledge exploration. Drawing inspiration from human problem-solving, CoG performs a continuous plan-explore-reflect cycle, where it proactively formulates investigation plans, performs dual-source retrieval, and dynamically reflects on progress to adjust strategies. Crucially, it establishes deep bidirectional synergy between structured graph and unstructured text, where entities extracted from text dynamically guide graph exploration to bridge knowledge gaps. Extensive experiments on seven multi-hop QA benchmarks demonstrate that CoG significantly outperforms state-of-the-art methods while achieving superior exploration efficiency. Our code and datasets are available at this https URL.
https://arxiv.org/abs/2609.12791