Continual knowledge graph embedding updates entity and relation representations as a graph grows. Existing methods primarily address catastrophic forgetting, but entity admission also changes the candidate universe of every compatible query. A historical answer can therefore lose rank even when its score and its ordering among old entities are preserved. We formalize this effect as candidate-set interference and introduce Matched Excess-Outranker Regularization (MEOR), a host-level objective that compares smooth answer-relative newcomer pressure with score-blind, structurally matched old references. Its one-sided penalty acts only when newcomer competition exceeds the matched reference, preserving the host learner's signal for legitimate new entities. Across eight paired runs on ENTITY-ComplEx, MEOR improves historical current-universe mean reciprocal rank (MRR) by 0.0057 over replay and reduces candidate-set interference by 0.0055, with one-sided 95% lower bounds of 0.0052 and 0.0051, respectively. It satisfies the preservation criteria for old-universe ranking and newcomer acquisition and improves historical current-universe MRR over persistent calibration, matched maximum regularizer (MMR), and unmatched old regularizer (UOR). Direct ablations support each component of its reference construction and aggregation. Adding MEOR also improves historical ranking in all ten reported FBInc-S and FBInc-L host and backbone settings, with every paired 95% confidence interval excluding zero. These results establish candidate admission as a distinct source of continual rank loss and show that it can be controlled without replacing the underlying embedding architecture or continual learner.
https://arxiv.org/abs/2608.24273
Radiology report generation (RRG) has recently benefited from large language models, which substantially improve report fluency. However, clinically faithful generation remains challenging because current supervision is still imposed mostly at the report level. This creates a granularity mismatch: radiology reports are composed of disease-grounded findings, while existing methods are trained mainly with whole-report objectives. To address this problem, we propose Graph-Supervised Hierarchical Clinical Alignment, which reformulates image-report supervision as a hierarchical clinical alignment problem. Our method structures this alignment as a disease-conditioned process, where supervision is decomposed into two levels: Disease-Centric Alignment for fine-grained disease-specific correspondence, and Global Clinical Semantic Alignment for report-level semantic coherence. A clinical knowledge graph is used as a training-time-only structural prior that defines disease-specific supervision units and their clinical relationships, introducing no additional overhead at inference. Because standard contrastive alignment could produce false negatives when studies share overlapping pathologies, we combine instance-conditioned discriminative matching with disease-conditioned soft regularization, enabling fine-grained yet clinically consistent cross-modal representations. Experiments on MIMIC-CXR, IU-Xray, and COV-CTR show that our method consistently improves performance on both conventional and clinical metrics. Notably, our 3B model surpasses several prior systems with larger 7B/13B backbones, suggesting that improving supervision structure, rather than increasing model size, can be more effective for RRG.
https://arxiv.org/abs/2608.24121
Structured data exists in many forms (tables, knowledge graphs, charts, and time series), and converting it into text may involve different generation tasks. However, most prior work on data-to-text (D2T) generation has focused on specific tasks and datasets, relying either on task-specific training data or on the zero-shot capabilities of large language models. We study cross-domain D2T generation in a setting where neither in-domain training text nor test references are available, and where domains, generation goals, and input structures vary substantially. We compare data-driven knowledge distillation (DDKD) against zero-shot inference and fine-tuning on out-of-domain D2T data, and introduce structure-preserving augmentation via structural subsampling and perturbation. Experiments on five benchmarks show that, at constant model size (1.7B parameters), DDKD consistently outperforms both fine-tuning and zero-shot inference. Moreover, the resulting small models outperform a much larger finetuned model on two of the five domains, achieving comparable performance on the remaining three. We further construct QUINTD-5, a fivefold extension of QUINTD-1, and show that simply scaling real target-domain inputs yields only modest gains, whereas our augmentation strategy remains more effective and more cost-efficient for cross-domain distillation.
https://arxiv.org/abs/2608.23391
Large Language Models (LLMs) recognise patterns but do not natively track the path of exclusions that a coherent discourse demands. When an input rests on a fabricated authority, a misapplied mechanism, or a surreptitious analogy, an unsteered LLM tends to engage with it as if it were grounded, and to reify the misstep into any structured output it generates. Logic-Augmented Generation (LAG) with POLANYI++, an LLM-steering method that uses heuristics, ontologies and problem solving methods for tacit knowledge extraction, produces an Extended Knowledge Graph (XKG) in OWL2, but inherits the same vulnerability: a sophisticated nonsensical input is reified into the graph alongside the legitimate triples, and is hardly detectable by automated reasoners since the XKG is generated jointly with the wrong assumptions. We introduce DARKSIDE, a coherence auditing method on top of POLANYI++. It formalises the trail as an explicit data structure of accumulated exclusions over discourse time, complemented by a warrant axis that classifies each named referent as Warranted, Unattested, Misattributed or Fabricated, with an escalation rule that pushes the DelegationRiskAssessment to UNSAFE when the fabricated rate is positive or the unsupported rate exceeds a threshold. We evaluate DARKSIDE as a steering layer over a Gemini 3 on BSBench, a 100-item adversarial corpus of sophisticated-sounding nonsense across software engineering, finance, healthcare, physics and law, with Claude Sonnet 4.6 as an independent judge. The empirical evidence supports an architectural claim: when an LLM forward pass is wrapped in an ontology-mediated negative-trail apparatus, the structural pattern-vs-path gap can be partially scaffolded. The XKG functions as the missing memory, and the warrant axis as an epistemic firewall.
https://arxiv.org/abs/2608.23370
The FAIR Digital Object (FDO) framework mandates that metadata attribute values be expressed as persistent identifiers (PIDs) wherever possible, to produce a fully machine-actionable graph in which every reference is resolvable. The Europeana Data Model was designed long before the FDO specification, and it stores most metadata values as plain text. This serves human browsing well enough, but gives an automated agent nothing to follow across records or collections. We present a pipeline that transforms flat Europeana records into an FDO-compliant knowledge graph structured with CIDOC-CRM. Following the FDO specification, we model every heritage entity as a discrete FDO with its own PID, type, profile, and metadata layer. The core technical challenge is automating the FDO-prescribed distinction between values that must become PID references (resolvable entities) and those that may remain literals (terminal leaves such as notes, measurements, and dates). We address this with a large language model that classifies each metadata value, routes it to a controlled vocabulary (Getty AAT, Wikidata, VIAF, PeriodO), and links it to a shared entity FDO. We evaluate using 637 archaeological records from five Europeana providers, processing each with the LLM. The pipeline links 86% of metadata slots, resolving 58.5% of values Europeana had not already enriched. It also merges cross-lingual surface forms that byte-identical matching keeps apart, where 17 of 33 such merges are correct on manual review. Graph connectivity does not separate this from string matching; what distinguishes the FDO graph is that every node is typed and resolvable.
https://arxiv.org/abs/2608.23263
Biomedical knowledge exists in two complementary but distinct forms: unstructured scientific literature and structured knowledge graphs (KGs). Aligning them is essential for knowledge grounding, evidence retrieval, and KG completion, yet existing methods do not explicitly align free-text evidence with KG triples. We present a unified framework for systematically studying design choices for aligning biomedical text and KGs. With a text encoder and a KG embedding model both frozen, we learn only a lightweight projection between their spaces via a contrastive objective. This enables a fair comparison across six design dimensions: text encoder, KG embedding model, projection head, triple composition, training direction, and hard-negatives sampling. We construct CTD-Align, a corpus of over 22K one-to-one tripledocument pairs linking chemical-gene interactions from the Comparative Toxicogenomics Database to supporting PubMed passages. We evaluate alignment on it in two retrieval settings: document-to-triple and triple-to-document. We find that the triple composition and the training direction (i.e., shared retrieval space) have the greatest impact, whereas the text encoder and hard-negatives sampling matter little. Overall, simple choices win: projecting text into the KG space with a linear head over concatenated subject, predicate, and object embeddings performs best. These findings establish lightweight contrastive alignment as an effective, practical foundation for bridging biomedical text and KGs.
https://arxiv.org/abs/2608.23214
Large language model (LLM) agents rely heavily on knowledge encoded in model parameters or presented as unstructured context. In domain-specific tasks, this leaves important semantic connections implicit. This often results in incomplete evidence use and brittle multi-step decisions. Ontologies offer a way to externalize domain concepts and relations as machine-interpretable structures, but constructing task-usable ontologies traditionally requires substantial effort from domain experts and is difficult to scale. Automatic construction is also challenging: an ontology that appears semantically plausible may not contain the relational structures needed for actual decision making. We present OaK, an ontology-as-a-kernel framework that dynamically constructs and refines task-oriented ontologies for LLM agents. Given task requirements and training data, OaK constructs an ontology and its knowledge graph, generates task-adaptation functions for graph reasoning, and uses judge feedback to iteratively refine both. By making relevant concepts and relations explicit, the ontology grounds knowledge retrieval and multi-step decision making. We evaluate OaK on TravelPlanner, CRMArenaPro, and ToolQA. Results show that OaK improves standard LLM agents, strengthens evidence grounding, and boosts the reliability of multi-step reasoning.
https://arxiv.org/abs/2608.22974
Knowledge graph question answering (KGQA) is a key task for evaluating KG-augmented Large Language Models (LLMs), and complex KGQA that requires multi-hop reasoning is especially challenging. Solving a complex query involves two coupled phases: candidate retrieval, which locates answer candidates over the KG, and constraint handling, which filters these candidates against the query constraints. Faithful reasoning requires grounding both phases in the KG. However, existing agent-based methods ground candidate retrieval through entity-centric exploration, while leaving constraint handling to the LLM's internal knowledge, which leads to two critical limitations. (1) Unreliable entity pruning: entity-centric exploration uses entities as search units and must prune them to a fixed-size subset at each hop. Because entity information in KGs is often incomplete and a fixed-size subset cannot retain all valid entities, such pruning inevitably drops valid entities and ultimately leads to wrong answers. (2) Ungrounded constraint handling: query constraints are resolved from the LLM's internal knowledge rather than the KG, leaving the final answers unverifiable and prone to hallucination. To address these limitations, this paper introduces a relation-centric exploration paradigm, which uses relations rather than entities as search units and thus avoids unreliable entity pruning. Built on this paradigm, this paper proposes Compositional Chain-of-Relations (CCoR), a simple and effective framework that grounds both phases in the KG with two relation chains: a main chain for candidate retrieval and a constraint chain that verifies query constraints through explicit KG exploration. Experiments on four KGQA benchmarks show that CCoR consistently improves accuracy, faithfulness, and efficiency over strong baselines, with more pronounced gains on complex queries.
https://arxiv.org/abs/2608.22762
Clinical records contain rich evidence about patient state, but converting that evidence into reliable, structured knowledge graphs remains difficult because extraction errors, ontology mismatch, missing relations, and temporal ambiguity can propagate into downstream systems. We propose a clinical knowledge graph construction and refinement framework that combines multi-agent relation proposal, ontology-aware normalization, deterministic evidence scoring, and JEPA-based latent refinement. Rather than treating a clinical knowledge graph as a static extraction artifact, we treat it as a predictive patient-state representation. For each admission, the system constructs an evidence-scored graph from structured MIMIC-IV records and inferred clinical cross-links, then learns to recover held-out clinical relations from the observed graph context. We evaluate the refiner with leakage-free leave-one-out edge recovery (MRR and Hits@k) and held-out batch-mask evaluation (AUC and MRR). To isolate the contribution of discharge-note context, we compare a note-embedding-free configuration with a note-augmented configuration that injects real discharge-note representations only into note-grounded entities. Under the same cohort and evaluation protocol, entity-grounded note injection improves overall leave-one-out MRR by 31% relative improvement.
https://arxiv.org/abs/2608.22583
Large language models (LLMs) are increasingly used to simulate students at different mastery levels. These simulations can generate synthetic training data and stress-test tutoring systems. However, common prompt-based approaches leave the answer decision to the LLM, which tends to perform according to its built-in capabilities even when instructed to simulate a student with low mastery. As a result, these approaches may have difficulty distinguishing students with low and high levels of mastery. We demonstrate this limitation using 379 College Board-calibrated SAT Algebra items and five archetypal mastery profiles. Three LLMs from three vendors (Gemini 3.1 Flash Lite, Claude Haiku 4.5, and GPT-5.4-mini) achieve 96.8-100% accuracy across all profiles. To address this limitation, we introduce a method grounded in a Stochastic Student Knowledge Graph (SSKG). A curriculum knowledge graph (CKG) is extracted from an open algebra textbook, and each SAT solution is decomposed into a chain of required triples. The SSKG assigns a mastery probability to each triple, which is sampled to determine question correctness. An LLM then generates a first-person rationale consistent with the outcome. The simulation reduces accuracy to 44.1-85.2% across profiles and produces a clear monotone mastery gradient.
https://arxiv.org/abs/2608.21668
Sequential recommendation predicts the next item from a user's interaction history, but not every interaction is equally informative. Real logs combine persistent preferences with temporary needs, exploration, and incidental behavior, so some interactions can distort history representations or provide unreliable supervision. Existing denoising methods judge such interactions mainly from co-occurrence, order, or model predictions, without explicit evidence from relations between items. Knowledge graphs (KGs) offer this evidence, but item popularity, graph degree, uneven coverage, and widely shared entities can inflate connectivity and bias reliability estimates. Here we present AdaptedKG, which derives calibrated KG evidence for each training example without adding graph representations to the recommendation model. It first compares the observed context with structurally matched alternatives to identify relational paths that are unusually prominent and uses them to build a local KG view. It then compares each interaction with structurally matched reference items to calibrate its support within that view. The resulting retention coefficients gate historical representations and reweight target losses. All sample-specific scores are computed offline using training interactions and a fixed KG, so the backbone remains unchanged and no KG access is required at inference. Experiments show gains with a standard sequential recommender and multiple behavior-denoising sequential recommenders.
https://arxiv.org/abs/2608.21243
Predictive political question answering (QA), such as predicting how a political actor will vote, goes beyond factual lookup. External political resources offer rich historical evidence, but rarely contain the answer itself. Existing LLM augmentation methods, including actor-profile-based simulation and knowledge graph evidence injection, improve political reasoning but largely treat external resources as knowledge-based evidence, leaving prediction-relevant signals under-modeled. We identify two complementary signals for predictive political QA: actor stances that capture issue-specific preferences, and high-order structure signals that capture indirect dependencies among political actors. We propose PSL, a dual-view framework that converts semi-structured political records into inference-oriented evidence for LLMs. PSL extracts stance signals from question-relevant actor records in a semantic view, and learns structure-aware actor representations from an actor interaction graph in a vector view. Across three real-world datasets and multiple LLMs, PSL consistently outperforms baselines, with ablations confirming the complementary gains of stance and structure signals.
https://arxiv.org/abs/2608.21218
Temporal Knowledge Graph (TKG) extrapolation seeks to infer future facts from time-varying relational histories. Recent diffusion-based approaches improve uncertainty modeling through generative denoising, but their aggregated conditioning on subject histories may insufficiently distinguish query-specific evidence from non-salient historical facts, thereby diluting target-discriminative signals. To bridge this gap, we propose FreqDiff, a Frequency-aware Diffusion framework for TKG extrapolation. Specifically, FreqDiff formulates future object prediction as query-slot denoising and develops a dual-stream denoiser that integrates temporal dependency modeling with context-aware spectral calibration. The spectral branch synthesizes history-conditioned filters from learnable bases to adaptively re-calibrate denoising representations, while a frequency-domain regularizer is proposed to align the denoised target with the gold object in spectral space. Experiments on four public TKG benchmarks demonstrate that FreqDiff achieves state-of-the-art performance.
https://arxiv.org/abs/2608.20804
Question Answering over Temporal Knowledge Graphs (TKGQA) requires reasoning over time-sensitive facts, yet existing embedding-based methods struggle with multi-step queries due to single-pass reasoning pipelines. We propose SABET-QA, a framework that iteratively refines reasoning states across multiple hops via a bidirectional entity-temporal scoring mechanism and a slot-aware contextualization module that aligns question semantics with temporal KG embeddings. A differentiable working memory enables progressive hypothesis refinement, while auxiliary temporal boundaries serve as coarse supervision when available. Experiments on CronQuestions, Complex-CronQuestions, MultiTQ, and TimeQuestions demonstrate consistent improvements over strong baselines, particularly on complex multi-step temporal queries.
https://arxiv.org/abs/2608.20083
Knowledge graph completion is evaluated by ranking observed triples above randomly corrupted ones, which treats every unobserved fact as false. When the object being completed is a description logic knowledge base rather than a plain graph, the open world assumption and deductive closure make this inadequate: relative to the knowledge base, a candidate axiom is entailed, contradictory, or undetermined, and a model that cannot separate a logically impossible axiom from a plausible novel one is not merely less accurate but semantically incorrect. We ask what it means for a knowledge base completion model to be logically faithful, and whether current embedding models are. We define a hierarchy of four increasingly strict criteria, discrimination, logical admissibility, monotonic logical faithfulness, and probabilistic logical faithfulness, and prove that they form a strict chain of implications. We ground the strongest criterion in the relative model count $P(\alpha\mid\mathcal{O}) = \#(\mathcal{O}\cup\{\alpha\})/\#(\mathcal{O})$, which recovers the trichotomy at its endpoints and ranks undetermined axioms in between. Evaluating knowledge graph and logic-geometric embedding models on $\mathcal{EL}$ ontologies, with entailed, contradictory, and undetermined test sets generated by a reasoner, we find that ranking accuracy does not imply logical faithfulness and that none of the evaluated models is faithful across the hierarchy. The code is available at this https URL.
https://arxiv.org/abs/2609.27863
Patients often submit short, underspecified queries to healthcare chatbots that lack the patient-specific information needed to determine an appropriate response. Although these queries may be linguistically clear, they can support multiple plausible answers depending on undisclosed factors such as symptoms, diagnoses, medications, allergies, or dietary restrictions. A language model answering such a query directly may therefore rely on unsupported assumptions about the patient. We introduce a knowledge-guided agentic framework for mitigating patient-context ambiguity before final response generation. The framework operates between the patient and an otherwise unchanged downstream language model. It interprets the initial query, uses a task-specific knowledge graph to construct a set of plausible hypotheses, identifies the missing patient-context variables needed to distinguish among them, and asks targeted follow-up questions. The original query and the acquired context are then combined into a clarified prompt for the downstream model. We evaluated the framework across five language models using two controlled ambiguity-mitigation benchmarks: diagnosis retrieval from 1,034 symptom queries with clinically relevant evidence systematically masked, and dietary-safety classification from 487 queries with decisive health context omitted. The framework was compared with direct answering of the underspecified query and with rephrasing the same query without acquiring new patient information. In diagnosis retrieval, it increased overall exact Top-1 accuracy by at least 57.1 percentage points and selective exact Recall@5 by at least 77.7 percentage points across the five evaluated models compared with direct prompting. In dietary-safety classification, it improved accuracy across all five models and achieved the highest Matthews correlation coefficient for four...
https://arxiv.org/abs/2608.19875
Vulnerability prioritization is inherently preference dependent, since the same CVE can receive different remediation priority under different operational preference scenarios. Existing scoring systems and ranking methods typically assume a fixed criterion. In practice, organizations already operate under a preference scenario, but this preference is often implicit and difficult to express as a written prompt instruction, while triage queries usually do not encode it. Past validated triage cases under the current scenario are more readily available. We study query-based CVE prioritization in this setting and propose HARP, a graph-grounded multi-view framework that ranks candidates from a natural-language query together with a support bank of historical labeled examples from the current preference scenario, without requiring an explicit textual summary of that scenario. HARP retrieves evidence from a vulnerability knowledge graph, scores candidates with policy-conditioned global, enterprise, and user views, and fits view-fusion weights from sampled supports. Experiments across three preference scenarios and multiple backbone LLMs show that HARP outperforms multiple baselines, expressing our method's effectiveness.
https://arxiv.org/abs/2608.19430
Class expression learning often produces complex OWL class expressions that are difficult to interpret and reason over. However, by following theoretically grounded simplification principles, this complexity can be reduced. In this paper, we propose Class Expression Simplifier (CES), a novel algorithm for the syntactic simplification of class expressions in Description Logics (DL). CES aims to preserve formal semantics while reducing representational complexity. It systematically applies rewriting rules to eliminate redundancies and identify simpler yet equivalent expressions, thereby producing more compact and human-readable representations without altering logical entailments. We evaluate the effectiveness of CES on class expressions learned from two medium-sized ontologies, demonstrating measurable improvements in reasoning efficiency and reductions in verbosity. This work contributes to the broader goal of making ontology-driven applications more accessible, maintainable, and scalable, with direct implications for knowledge graph construction, semantic search, and Web-scale reasoning. CES is implemented within the open-source Python framework OWLAPY and is publicly available.
https://arxiv.org/abs/2608.18899
Knowledge graph question answering (KGQA) and knowledge-graph-based retrieval-augmented generation (KG-RAG) aim to ground answers in explicit graph evidence, but real-world knowledge graphs are often sparse, outdated, and incomplete. Existing robustness evaluations usually report aggregate changes in answer quality after evidence is removed or perturbed, which measures sensitivity to incomplete support but leaves the source of degradation under-specified: the same score change can conflate the type of missing evidence, the response of the evaluated system, and the sensitivity of the answer-matching protocol. To address this gap, we propose \textbf{MissDiag}, a diagnostic evaluation framework for incomplete-knowledge robustness in KGQA and KG-RAG. MissDiag keeps the question and gold answer fixed while applying structurally typed missingness interventions to benchmark-provided support graphs, enabling paired comparisons that decompose robustness changes by evidence type, system response, and evaluation protocol rather than reducing them to a single aggregate score drop. Experiments across multiple system families show that incomplete-knowledge robustness is better understood as a typed degradation phenomenon than as a uniform property: answer-adjacent evidence loss produces the largest observed degradation, source-context removal is often neutral and can be beneficial, and semantic answer matching changes absolute scores while preserving the main typed degradation patterns. By transforming aggregate robustness measurement into typed diagnostic attribution, MissDiag provides a more interpretable basis for comparing, diagnosing, and stress-testing KGQA and KG-RAG systems under incomplete knowledge.
https://arxiv.org/abs/2608.18489
LLM-driven agents can autonomously exchange opinions on online platforms and form communities. Such agent-operated social platforms raise a new security concern: attackers may manipulate agents to induce group polarization. Existing methods manipulate agent prompts or construct echo chambers, both of which are difficult to realize in practice. We therefore formulate a new threat, Memory-Mediated Polarization Cascade, which uses agent memory as a persistence channel and public discussion as a propagation channel. This threat contains three stages. During exposure and memory retention, the attacker exposes a small set of target agents to arguments that reinforce their respective stated stances. The targets' memory systems then process and retain these arguments. During retrieval and reproduction, a shared stance-neutral discussion cues the targets to retrieve and reproduce their respective retained arguments. During iterative propagation, untreated agents influenced by the reproduced arguments restate and spread them. We instantiate this threat in GraphWake with three components: (i) stance-support argumentation knowledge graphs construct knowledge-based arguments; (ii) axiom-oriented triple selection distills them for reliable retention and reproduction; and (iii) stance-neutral memory cueing triggers concurrent retrieval and reproduction, initiating propagation. Experiments across multiple discussions and memory systems show that GraphWake substantially increases group polarization. These findings reveal a community-level polarization risk.
https://arxiv.org/abs/2608.17665