Ontology
-
Transfer Learning for FHIR Questionnaire Terminology Binding
2026-06-13 19:46:44Maxim GorshkovAbstract
Electronic prior authorization workflows require FHIR Questionnaire items to carry LOINC codes, yet most items in the HL7 Da Vinci CDS-Library lack these bindings. We treat this as a retrieval problem: given a Questionnaire item's text, find the correct LOINC code in a pool of 97,314 active codes. We compare six methods (TF-IDF, frozen MiniLM, BioBERT, BioLORD, contrastively fine-tuned MiniLM, and a TF-IDF+GPT reranker) on a 54-item evaluation set spanning three query styles (natural question, medium, and terse). No single method wins on every metric. BioLORD, a frozen encoder pre-trained on biomedical ontology definitions, has the best top-rank accuracy (R@1 = 0.185, MRR = 0.246) despite seeing no task-specific data, while a contrastive fine-tune on raw LHC-Forms pairs takes R@5 (0.389) and R@10 (0.426). A distribution-shift ablation shows why the fine-tune in our main table is not the strongest one: adding GPT-generated paraphrases to the raw pairs drops R@5 from 0.389 to 0.296, so the augmented union underperforms raw-only training on every metric except R@1. Performance peaks at 5k training pairs. Error analysis on BioLORD's R@1 failures shows that wrong-specificity and ambiguous-text cases together account for 59% of errors.
Abstract (translated)
URL
https://arxiv.org/abs/2606.15449
PDF
-
Bridging Geographic Bias in Urban Streetscape Inference via Lifelong Learning with Visual-Semantic Pivoting
Abstract
Visual perception of urban streetscapes underpins evidence-based decisions in landscape planning, public health, and place-making. Yet models trained on a few well-photographed metropolises systematically misjudge underrepresented districts, propagating geographic bias into downstream policy. We address this gap with HVSP-LL, a lifelong learning framework that couples a stratified visual-semantic pivoting module with an equity-aware rehearsal mechanism. The pivoting module organises landscape concepts along a three-tier ontology (macro structure, meso composition, micro element) and aligns image features to learnable semantic anchors at each tier, providing transferable representations that resist distributional drift. The lifelong adaptation component sequentially absorbs new urban regions while constraining inter-region perception gaps through a worst-region sample-reweighting objective and a structurally-aware exemplar buffer. We evaluate HVSP-LL on a panoramic streetscape benchmark assembled from twelve cities across four continents and seven perceptual dimensions. The framework attains 0.834 Spearman correlation on the held-out city sequence, an absolute 6.1 point improvement over the strongest continual baseline, and shrinks the inter-city perception gap to 0.094 -- a 38% reduction relative to the strongest continual baseline (0.151) and a 57% reduction relative to a representative regularisation baseline (0.218). Ablations confirm that each tier of the pivoting hierarchy contributes monotonically, and the equity-aware rehearsal converts mean backward transfer from -0.038 (without retention) to +0.013, eliminating catastrophic forgetting on the held-out sequence. Our results indicate that hierarchical anchoring is a practical pathway toward geographically equitable streetscape inference at city scale.
Abstract (translated)
URL
https://arxiv.org/abs/2606.15055
PDF
-
A Multi-Level Architecture for Reusable Materials Ontologies -- The OntoCrafter Ceramics Ontology as Reference Implementation
2026-06-12 10:10:19Thomas Pannek, Wolfgang GrondAbstract
The Materials Science and Engineering ontology landscape is fragmented along multiple axes simultaneously. Horizontally: a recent survey identified 94 ontologies of which over 40 are structurally incompatible; each new application domain -- ceramics, polymers, batteries, smart materials -- typically restarts ontology design from scratch. Vertically: EU regulation (CSRD, CSDDD, PPWR, CBAM, R2R, AI Act, ESPR) forces material, manufacturing, supply-chain, and lifecycle data into integrated digital product passports, leaving ontologies that only address horizontal fragmentation incomplete for any contemporary consumer. And mechanistically: a vocabulary that records that BNT-BT has $d_{33} \approx 580$ pC/N stores a fact but cannot surface why -- Bi-6s$^2$ lone-pair stereo-activity, anomalous Born effective charges, soft modes, defect chemistry -- without a systematic explanation skeleton. We propose a multi-level modular architecture with two independent classification axes -- level of abstraction (L0 bridges, L1 material-agnostic laboratory-notebook, L2 material-class-specific, L3 categorical reasoning) and consumer audience (material vs. compliance) -- in which the material-specific level is internally organised by a seven-tier mechanistic-explanation skeleton (Symmetry, Energy/DFT, Thermo/CALPHAD, Kinetics, Microstructure, Defect chemistry, Bonding) applicable to any crystalline ionic oxide. The level-and-audience modularity dissolves the horizontal fragmentation, the compliance audience absorbs the vertical regulation pressure, and the seven-tier organisation of Level 2 delivers the mechanistic explanation depth. We instantiate the architecture as the OntoCrafter Ceramics Ontology (OCO v0.94): 5,196 classes across 44 modules; 167,348 OWL axioms (40,454 logical); 1,674 properties; 829 cross-ontology bridge mappings; 1,172 SHACL shapes; 163 published competency questions.
Abstract (translated)
URL
https://arxiv.org/abs/2606.14814
PDF
-
Ontology Memory-Augmented ASR Correction for Long Text-Speech Interleaved Conversations
2026-06-11 15:18:32Xinxin Li, Huiyao Chen, Meishan Zhang, Yunxin Li, Zulong Chen, Zhibo Ren, Xiaoqing Dong Baotian Hu, Min ZhangAbstract
Automatic speech recognition (ASR) correction has traditionally focused on isolated utterances or short local contexts. However, as text and speech become increasingly interleaved in long interactions, ASR correction requires conversation-level contextual evidence. Existing ASR correction methods often rely on the current hypothesis or concatenate raw dialogue history. In such contexts, sparse correction evidence can be difficult to locate amid redundancy and noise. Addressing these challenges, we propose an ontology memory-augmented ASR correction framework for long text-speech interleaved conversations. The framework organizes preceding interaction history into a dynamically updatable ontology memory, where entities, terminology, surface variants, potential ASR confusions, and semantic relations are stored as retrievable nodes for context-grounded correction. To evaluate this setting, we construct RAMC-Corr, a dataset derived from MAGIC-RAMC for long-range ASR correction with grounded context. Experiments on RAMC-Corr show that our method improves over direct correction in 9 out of 10 paired backbone-setting combinations and encourages more selective and evidence-grounded corrections for context-dependent ASR errors.
Abstract (translated)
URL
https://arxiv.org/abs/2606.13464
PDF
-
HRDX: A Large-Scale Vector HD-Map Dataset
2026-06-11 15:08:37Sahith Reddy Chada, Isht Dwivedi, Nirav SavaliyaAbstract
Reliable autonomous driving requires vectorized HD maps that are geometrically accurate, semantically rich, and scalable to long-horizon driving. However, existing public HD map datasets are limited in scale, provide sparse semantic attributes, and lack modalities such as aerial imagery that could enable new research directions. We present HRDX, a large-scale dataset for vector HD-map construction, spanning about 40 hours (1,400 km) of minimally overlapping drives, which is several times larger than prior public HD map datasets. Data is captured using six synchronized surround cameras, a 128-beam LiDAR, and centimeter-level RTK GNSS/IMU, and is further complemented by precisely aligned aerial orthoimagery. Annotations cover 10 vector map classes, complemented with over 20 semantic and topological attributes. To evaluate this richer ontology, we introduce the Composite Score (CS) to jointly assess geometric fidelity and attribute correctness. Benchmark experiments show that HRDX's scale improves online vector-map construction, and that aligned aerial imagery provides a useful structural prior: using aerial imagery at training and/or inference improves geometric map quality, while aerial-augmented teachers can transfer part of this benefit to camera-only students without increasing inference-time sensor requirements. HRDX is intended to support reproducible research on large-scale HD-map learning, multimodal BEV fusion, and training-time privileged information. HRDX dataset and benchmarks are available at this https URL
Abstract (translated)
URL
https://arxiv.org/abs/2606.17080
PDF
-
Definitional alignment before capability alignment: a Design-Science framework for adjudicating claims about AGI
Abstract
Claims that artificial general intelligence has already arrived and claims that it remains decades away are often defended from overlapping evidence. "AGI" lacks a single shared and stable referent and competing operationalizations can return different verdicts on the same system. This article treats that under-specification as a design and governance problem. Following Design Science Research Methodology, it develops DAF-AGI, a second-order conceptual artifact with two coupled components: five ordinal criteria for assessing the adjudicative fitness of candidate definitions and a structured governance audit of authorship, interest, certification, external verification and revision authority. The artifact is demonstrated on five prominent measurement families and one deflationary boundary position in a documented corpus and then stress-tested against a stylized strong arrival claim: that current generative systems constitute AGI because they outperform a well-educated adult on many cognitive tasks. On evidence from the cited 2024-2025 sources, the claim was certifiable only under a performance-based operationalization; capability-ontology, psychometric and skill-acquisition approaches did not certify it, the economic family remains indeterminate and the deflationary position refuses binary adjudication. The contribution is a novel integration and operationalization, not an empirical validation: independent application, inter-rater testing and author-external cases remain necessary. The paper further proposes definitional sovereignty as an enabling component of algorithmic sovereignty: the institutional capacity to contest, certify and revise imported technological categories under public accountability.
Abstract (translated)
URL
https://arxiv.org/abs/2606.12713
PDF
-
An Ontology-Guided Multi-Anchor Graph Retrieval Framework for Traffic Legal Liability Determination
2026-06-10 10:40:20Xu Li, Shuqi Tian, Xun Han, Kuncheng Zhao, Xinyi LiAbstract
Traffic law liability determination is critical for assigning legal penalties, requiring the simultaneous identification of interdependent statutory provisions across multiple legal dimensions. However, existing retrieval-augmented generation methods suffer from a multi-dimensional retrieval bottleneck: single axis architectures compress complex legal queries into a single pathway, causing interdependent statutory dimensions to be overlooked. To address this, we propose OMAGR, an ontology-guided framework that decomposes queries into ontology-aligned anchors and executes parallel graph retrieval across each dimension, ensuring independent retrieval across dimensions before fusion. To evaluate the proposed method, we created the TrafficLaw-QA dataset, an expert-validated benchmark dataset containing 200 questions and 527 legal provisions. Results show that TrafficOmni-RAG outperforms baselines on Context Precision and Faithfulness metrics. The findings demonstrate that parallel multi-anchor retrieval effectively resolves the multi-dimensional retrieval bottleneck, offering a promising direction for traffic law liability determination research.
Abstract (translated)
URL
https://arxiv.org/abs/2606.11910
PDF
-
Extracting Semantics: LLM-Guided Automatic Population of Robot Ontology from URDF
2026-06-10 08:08:37Bastien Dussard (LAAS-RIS, LAAS), Guillaume Sarthou (LAAS-RIS, LAAS)Abstract
While commonsense knowledge may suffice for virtual agents, embodied robots interacting with humans require grounded and semantically rich representations of both their environment and their own physical embodiment. In cognitive robotics, ontologies are effective for integrating such heterogeneous knowledge to enable explainable reasoning, even during continuous knowledge updates. Yet, their manual construction remains a bottleneck. We present a preliminary approach for the automatic generation of robot semantic abstractions by transforming Unified Robot Description Format (URDF) models into populated ontologies. Although URDF files provide structural and kinematic descriptions, their identifiers often require commonsense interpretation to recover meaningful semantics, a task at which Large Language Models (LLMs) excel. Our pipeline leverages LLMs to infer semantic relationships by prompting them with concepts from an existing ontology, ensuring the final classification remains aligned with the formal model. To improve reliability, the pipeline combines majority voting across multiple LLM queries along with syntactic and schema-level validation to ensure that generated outputs conform to the expected representation format and ontology constraints. We evaluate the approach on multiple robot descriptions and discuss the generated abstractions. Initial results indicate that the proposed method can effectively bridge the gap between low-level robot descriptions and the structured, grounded knowledge representations required for human-robot interaction.
Abstract (translated)
URL
https://arxiv.org/abs/2606.17073
PDF
-
Layer-Isolated Evaluation: Gating the Deterministic Scaffold of a Production LLM Agent with a No-LLM, Regression-Locked Test Harness
2026-06-10 05:55:13Sawyer Zhang, Alexander Wang, Sophie LeiAbstract
End-to-end task-success is the dominant way to evaluate LLM agents, but one aggregate number tells you that an agent regressed, not where. We present layer-isolated evaluation: a deployed ordering agent is decomposed into a fixed taxonomy of layers (ontology, intent, routing, decomposition, escalation, safety, memory, and cross-cutting envelope/defense), each exercised by its own assertion slice in a deterministic, no-LLM "pure" mode. The pure suite (238 cases across 23 slices; 225 run in 2.39 s, ~10 ms/case) runs in CI on every change against a locked per-slice baseline. We validate by controlled regression injection, degrading one layer at a time across seven non-safety layers. The effect we did not design in is masking: the aggregate pass-rate barely moves (-1.7 to -5.9 pp for six local regressions), while the matching slice craters (-25 to -91 pp). A layer's slice reacting to its own fault is partly by construction; the measured results are (i) the aggregate masking and (ii) that damage stays off the other slices: the injected layer's slice is the single worst-hit in 5 of 7 cases and top-3 in 7 of 7 (mean rank 1.29 of 19). Localization replicates on a second, structurally different tenant (Starbucks SG): all seven matching slices crater, so it is not a single-catalog artifact. We position it as a concrete, deterministic instantiation of the component-level evaluation EDDOps prescribes but leaves unimplemented, with CheckList as ancestor and as the deterministic mirror image of whole-workflow stochastic mutation testing. Our contributions: (a) a fully decomposed, sub-second, no-LLM per-layer harness for a production agent, (b) a coverage-honesty test-adequacy criterion that refuses to score an unexercised layer, and (c) the regression-injection demonstration that per-slice baseline-locked gates localize regressions an aggregate metric masks.
Abstract (translated)
URL
https://arxiv.org/abs/2606.11686
PDF
-
WorldKernel: A World Model is the Coupling Kernel of Admissible Possible Worlds
Abstract
A common assumption holds that enough observational and interventional data, given to a strong enough predictor, suffices. We report a failure mode that contradicts it. Across hundreds of structural causal models, on identified quantities a strong predictor and a Bayesian baseline both succeed, but on unidentified quantities (the couplings between counterfactual worlds) the predictor collapses to a point, on 28% of models to one no valid model can produce, while the truth is an admissible interval more data never narrows. The gap is structural: prediction cannot represent uncertainty over counterfactual couplings. We cast a world model as a single positive semidefinite coupling kernel K(T,T') over admissible worlds, whose diagonal is the ordinary posterior (what a predictor recovers) and whose off-diagonal is the cross-world coupling it cannot, which every counterfactual reads. The paper is the theory of that off-diagonal. It is real: two states with identical posteriors differ on a cross-world query, and the off-diagonal is the coupling that fixes counterfactuals. It can be bounded: positive semidefiniteness is partial-identifying information the marginals lack, and enforcing it bounds counterfactuals in polynomial time where the exact response-type program is intractable. Logical structure sharpens it: ontology axioms tighten the bound by up to a third, propagating to couplings they never touch. It can be acquired: targeted scars, constraints learned from encountered infeasibilities, close the gap several times faster than untargeted ones. Its full reconstruction is approximate counting of the admissible worlds, tractable below the Sly-Sun threshold and inapproximable above; we do not claim to beat the worst case.
Abstract (translated)
URL
https://arxiv.org/abs/2606.10934
PDF
-
Emergent alignment and the projectability of ethical personas
2026-06-08 13:30:29Guillermo Del Pinal, Youngchan Lee, Cameron McNamara, Alejandro Perez CarballoAbstract
Work on `emergent misalignment' shows that finetuning LLMs on narrow tasks can induce broadly misaligned behavior. This supports the `persona selection' (PSM) hypothesis: during pre-training, LLMs learn to simulate different characters and perspectives, which can be elicited and refined during post-training. This paper investigates the converse phenomenon, `emergent alignment', and uses it to support and refine the PSM and motivate a novel desideratum for alignment. We finetune a helpful-only model on broad and narrow safety tasks. To create SFT samples, we follow the `Constitutional AI' (CAI) approach and use four constitutions which encode reasonable alignment strategies: deontology, consequentialism, virtue ethics, and aligning AIs as subordinate to human authority. For each of those models, we show that finetuning on two narrow safety sub-categories reliably induces emergent alignment over a representative set of general safety categories, and on safety subcategories that we directly filtered-out of the data sets used for narrow alignment. To test the `PSM' using a more fine-grained evaluation, we used a multidimensional `ethical persona' diagnostic. For each constitutionally finetuned (broad/narrow) model, we evaluate how well their behavior matches their expected signature profile. Our results show that our CAI models acquire their expected ``ethical persona'' -- e.g., the model narrowly fine-tuned on SFT samples created using the consequentialist constitution agrees significantly more with utilitarian than deontological beliefs. Yet our coarse and fine-grained evaluations show that there are significant differences across our (broad/narrow) finetuned CAI models in how well they project. We conclude that alignment strategies should be evaluated, not just on their (in-distribution) general safety performance, but also specifically on their degree of projectability.
Abstract (translated)
URL
https://arxiv.org/abs/2606.09475
PDF
-
From USD Scenes to Knowledge Graphs: Zero-Shot Ontology Grounding with LLMs
2026-06-08 07:32:06Jiangtao Shuai, Zongxiong Chen, Manfred Hauswirth, Sonja SchimmlerAbstract
Constructing knowledge graphs from 3D simulation scenes is essential for robot task reasoning, but the key bottleneck, grounding scene objects to formal ontology classes, still relies on manually curated dictionaries that are brittle and do not generalize across assets. We investigate whether large language models (LLMs) can automate this grounding step for Universal Scene Description (USD) scenes as a zero-shot, training-free alternative. On a kitchen scene (125 objects) with SOMA-HOME Ontology, LLMs achieve 90-96% exact-match accuracy with descriptive names and 49-89% with abbreviated names, substantially outperforming dictionary and embedding baselines. Under fully opaque names, context-augmented prompting recovers up to 48%. Feature ablation reveals that LLMs primarily exploit semantic cues in the scene graph (sibling names and parent paths); anonymizing these cues reduces accuracy to 0-6%, while geometry alone yields only 4-17%.
Abstract (translated)
URL
https://arxiv.org/abs/2606.09134
PDF
-
ChinaHeritaQA: A Culturally-Grounded Visual Question Answering Dataset for World Heritage Sites in China
2026-06-08 03:00:45Yi Zhang, Bolei Ma, Yong Cao, Chengyan Wu, Daniel Hershcovich, Anna-Carolina HaenschAbstract
We introduce ChinaHeritaQA, a multimodal benchmark dataset for evaluating the cultural reasoning abilities of vision-language models (VLMs) on UNESCO World Heritage sites in China. The dataset comprises 2,279 in-the-wild images paired with 14,133 bilingual (Chinese/English) multiple-choice QA pairs spanning seven cognitive dimensions, from basic identity recognition to historical periodization and architectural analysis. Guided by a UNESCO-aligned heritage ontology and verified through rigorous human annotation, the dataset ensures linguistic quality and factual consistency. Evaluations of state-of-the-art VLMs reveal that while top models exceed human performance on average, substantial task-level variation emerges: models excel at visual recognition but struggle with culturally grounded reasoning. Performance also varies by dynasty and region. ChinaHeritaQA reveals that strong visual retrieval does not extend to cultural and historical understanding. We release the dataset to support future research on culturally aware multimodal learning.
Abstract (translated)
URL
https://arxiv.org/abs/2606.08959
PDF
-
From Regulatory Approvals to Patents: Cross-Domain Linking for Cardiovascular Device Traceability
2026-06-06 07:03:43Yang Qingqing, Liu Haijiang, Li MoyanAbstract
Linking FDA-approved medical devices to their underlying United States Patent and Trademark Office (USPTO) patents enables critical applications such as recall root-cause analysis, M&A-driven IP discovery, and technology trajectory mapping. However, this cross-domain entity linking task remains unexplored due to severe *semantic gaps*: FDA documents focus on clinical outcomes, while patents describe technical mechanisms, yielding minimal lexical overlap. We formalize medical device-patent linking as a challenging cross-domain entity linking problem characterized by label scarcity and domain shifts. Using cardiovascular devices as a high-impact, representative domain featuring diverse technologies, high recall rates, and abundant disclosures, we construct a benchmark with 434 devices, 698K patents, and 585 high-fidelity expert-verified pairs. To address these challenges, we propose Bridge-MedDevKG, a coarse-to-fine framework that integrates (1) **MedDevOnto**, a domain-specific ontology that anchors device concepts via three-tier UMLS normalization; (2) **Multi-signal candidate generation** fusing company affiliation, semantic similarity, and ontology-weighted entity overlap; and (3) **Heterogeneous reranking** with multi-signal scoring and XGBoost classification on hard negatives. Our approach achieves a conservative lower-bound recall of 91.6% on the gold standard with 50.9% noise reduction, substantially outperforming LLM baselines under comparable evaluation. The resulting MedDevKG provides 6.8M high-confidence links, laying a scalable foundation for regulatory-IP integration across medical specialties.
Abstract (translated)
URL
https://arxiv.org/abs/2606.28353
PDF
-
MetaConfigurator: AI-Assisted RDF Authoring from JSON Data
2026-06-05 09:42:01Felix Neubauer, Mahdi Jafarkhani, Kenichi Endo, J\"urgen Pleiss, Benjamin UekermannAbstract
Scientific workflows increasingly generate structured JSON data that is easy to exchange but difficult to interpret consistently across systems due to lacking semantic interoperability. While JSON Schema ensures structural validation, it provides no native support for Linked Data semantics. This paper presents an RDF Authoring View extending the open-source JSON Schema editor MetaConfigurator, enabling researchers to transform existing JSON, YAML, or CSV data into RDF using AI-assisted RML mappings, refine triples, execute SPARQL queries, visualize knowledge graphs, and export RDF serializations within a single integrated web interface. This workflow is supported by ontology-aware IRI auto-completion, bidirectional synchronization between JSON-LD text views and RDF triple tables, and AI-assisted SPARQL query generation from natural language hints. We demonstrate the workflow using laboratory data from metal-organic framework (MOF) synthesis experiments. Protocol data describing reagents, procedure steps, and quantities is converted from JSON to ontology-based JSON-LD via RML mappings. We then refine the semantic representation, query relationships between experimental conditions and outcomes, and explore the resulting knowledge graph interactively. This integrated environment bridges conventional structured data management with Semantic Web technologies while preserving experimental context and lowering technical barriers through AI assistance.
Abstract (translated)
URL
https://arxiv.org/abs/2606.07094
PDF
-
Natural Language Input, Semantic Track Representation, and LLM Inference: Making the Maritime Information Exchange Model Tractable
2026-06-03 15:12:43Frederick RothAbstract
We describe a practical architecture for making the Maritime Information Exchange Model (MIEM) and the broader Rich Semantic Track model tractable using current large language model (LLM) technology. The barrier to adoption of semantic track models in defense and law enforcement has been the requirement that operators learn formal ontology languages and manually encode observations as typed logical assertions. We propose eliminating this barrier entirely: operators contribute observations in natural language; an LLM translates these into typed Semantic Assertion Records (SARs), which are named case frames that capture n-ary relations in a single compact structure; a knowledge graph accumulates the SARs; and a second LLM pass performs inference, anomaly detection, and hypothesis ranking over the graph. We work through two detailed examples (a 9/11-era pre-attack indicator scenario and a maritime cargo inspection scenario) showing the full pipeline from natural language input to SAR representation to inference output. We argue that this architecture makes the Track Model and MIEM immediately deployable with current technology, establishes prior art against proprietary enclosure of the approach, and grounds the method in a theoretical framework connecting semantic track representations to neural manifold geometry.
Abstract (translated)
URL
https://arxiv.org/abs/2608.24892
PDF
-
Provably Auditable and Safe LLM Agents from Human-Authored Ontologies
Abstract
We introduce the LLM agent architecture Agentic Redux, intended for use with nontrivial problem domains that require linear auditability. Using the typed lambda calculus, we prove that, run on appropriate domains, Agentic Redux executions are semantically guaranteed to be correct, with all decisions recorded in an append-only ledger. We present two production-grade appropriate domains, in healthcare billing compliance, and security vulnerability disclosure. Working code for Agentic Redux run on both domains is available in a supporting code repository. We also introduce Ontology-First Agent Design, a methodology for creation of agent frameworks on a problem domain, in which a human expert ontologizes the problem domain with Basic Formal Ontology, and then assigns an LLM to derive roles that agents and humans-in-the-loop can fill, in order to work the problems in the domain.
Abstract (translated)
URL
https://arxiv.org/abs/2606.04903
PDF
-
A cross-domain tropical species dataset with Chinese vernacular names and CITES source links
Abstract
We describe a versioned cross-domain dataset of 410,499 active tropical species (working snapshot 2026-04-20) spanning three applied subdomains -- tropical_plants, tropical_aquatic, and tropical_pets -- that share a commercial and regulatory life cycle but are distributed across kingdom-organised biodiversity infrastructures. The resource joins taxonomic identifiers from GBIF, Plants of the World Online, iNaturalist, NCBI Taxonomy, the Catalogue of Life and the Encyclopedia of Life, and adds three original layers: a cross-domain ontology that re-segments taxa along trade and husbandry contexts; a Chinese vernacular layer with explicit per-name provenance under a typology that excludes unverified machine-generated proposals; and a CITES source-linkage layer connecting each taxon to its Species+ entry. Chinese vernacular coverage -- the proportion of taxa carrying a CJK Chinese name distinct from the scientific binomial -- reaches 99.50 percent (408,456 of 410,499; full-population count). Coverage characterises completeness, not name-translation accuracy; the latter is bounded by the four-level provenance typology and is the subject of a preliminary internal review reported here, with a blind external audit identified as the principal open item. Upstream content is referenced by stable identifier only for the original-contribution layers, supporting CC-BY 4.0 reuse. The dataset is deposited on Zenodo (https://doi.org/10.5281/zenodo.20377811). This preprint is the canonical v1.0 description of the dataset's current state; future Data Descriptor submission is anticipated but is contingent on the validation and release-engineering items listed in the Limitations.
Abstract (translated)
URL
https://arxiv.org/abs/2606.03156
PDF
-
Toward Pre-Deployment Assurance for Enterprise AI Agents: Ontology-Grounded Simulation and Trust Certification
2026-06-02 02:37:11Thanh Luong Tuan, Abhijit SanyalAbstract
Pre-deployment verification of enterprise artificial intelligence (AI) agents remains a critical gap between large language model (LLM) capability benchmarking and production deployment. Post-deployment monitoring, human-in-the-loop controls, and prompt-level guardrails offer limited assurance once an agent is operating in production. We propose an ontology-grounded verification framework combining three components: an Agent Operational Envelope formalizing the certification space across permissions, domain constraints, safety properties, governance rules, and autonomy levels; an ontology-to-scenario generation pipeline that derives regulatory, operational, and adversarial test scenarios automatically; and a Trust Certificate carrying a machine-verifiable attestation with graduated deployment verdicts (Approved, Conditional, Rejected). A controlled pilot across four regulated industries (Fintech, Banking, Insurance, and Healthcare), instantiated as five industry-by-regulatory-regime cells across the United States and Vietnam, generated 1,800 scenarios evaluated against 125 primary-source regulatory requirements and 25 injected faults. Ontology-grounded generation (G4) achieved 48.3% regulatory coverage versus 33.1% for the persona-based baseline (corrected p = .0006) and the highest domain specificity (4.77/5.0; p = 2e-6). The coverage advantage over baseline and retrieval-augmented prompting was not robust after Bonferroni correction. Cross-validation across three LLM families (Claude Sonnet 4, Qwen 2.5 72B, Gemma 4 26B; 5,400 total scenarios) replicated the persona-versus-ontology pattern. The results establish ontology-grounded scenario generation as a credible complement to persona-based test suites for regulatory-intensive domains.
Abstract (translated)
URL
https://arxiv.org/abs/2606.04037
PDF
-
ClinEnv: An Interactive Multi-Stage Long Horizon EHR Environment for Agents
2026-06-01 17:56:26Yuxing Lu, Yushuhong Lin, Wenqi Shi, J. Ben Tamo, Xukai Zhao, Jinzhuo Wang, May Dongmei WangAbstract
Clinical practice is not the selection of an answer from enumerated options: a physician gathers heterogeneous information incrementally and commits to sequential, irreversible decisions under uncertainty. Static benchmarks cannot probe and existing interactive medical benchmarks each compromise on at least one of them. We present ClinEnv, an interactive benchmark that evaluates LLMs as attending physicians over real inpatient admissions under a paradigm we term Longitudinal Inpatient Simulation. Each case is automatically constructed into an ordered sequence of decision stages; at every stage the model must actively query four specialized agents before committing to medications, procedures, and diagnoses. ClinEnv scores both what the model decides, through deterministic ontology-grounded matching, and how it gathers information. Across seven models, the strongest reaches only 0.31 decision F1, and outcome quality is sharply decoupled from process quality. Difficulty concentrates in management decisions and later stages, where models recover discharge diagnoses far more reliably than management actions (0.51 vs. 0.17 F1) and continue to issue redundant queries as cases progress. ClinEnv makes this information-acquisition gap, invisible to outcome-only evaluation, directly measurable.
Abstract (translated)
URL
https://arxiv.org/abs/2606.02568
PDF
