Understanding compositional failures in text-to-image diffusion requires identifying both where stress is detectable and how intervention changes the output. We study these questions through a controlled anchor--stress protocol that jointly evaluates text-encoder diagnostics and denoiser interventions. We introduce a text-only Compositional Stress Index (CSI), which separates common from rare compositions across SD1.5, SDXL, and the SD3 text path and provides an upstream diagnostic coordinate. A matched six-prompt localization study links intervention location to distinct outcomes: residual-minimizing embedding adapters improve representation fit, while downstream cross-attention intervention increases color hit rate (CHR) by 0.0272. Across SD1.5 and SDXL denoiser blocks, the largest positive signed diagnostic-accessibility mean occurs at the deep encoder, whereas selective boost has its largest positive mean CHR response at decoder blocks. Selective subtraction and broad ablation reveal further modality- and architecture-dependent responses, including a substantial CHR decrease when SDXL decoder cross-attention is broadly ablated. We find a diagnosis-control dissociation under our controlled attribute-object composition setting: compositional defects are diagnosable before denoising, but the representation coordinate that exposes risk is not necessarily the coordinate or modality that improves generation.
https://arxiv.org/abs/2610.03068
Gene set analysis is a cornerstone of functional genomics, yet it remains labor-intensive and heavily dependent on manual curation and expert biological interpretation. While Large Language Models (LLMs) have emerged as powerful tools for genomic reasoning and annotation, most existing approaches rely on symbolic gene names and fail to capture domain-specific biological structure, particularly protein sequence information that governs molecular activity, interactions, and downstream gene function. In this work, we propose SoftGene, a novel framework for LLM-based gene set annotation that leverages the hierarchical structure of gene sets. First, we use a hierarchical attention-based encoder built on ESM, a protein language model, to represent each gene set using protein-level amino acid sequence information. Second, we construct a hybrid prompting scheme that combines soft prompts derived from gene set embeddings with hard prompts containing auxiliary context generated by an LLM, and feed the resulting prompt into a local LLM for annotation. We evaluate our framework on two benchmark datasets: Gene Ontology (GO) and the Molecular Signatures Database (MSigDB). Our results show that integrating protein-sequence representations with textual context improves gene set annotation overall, while per-domain analyses reveal that the contribution of protein embeddings varies across biological domains.
https://arxiv.org/abs/2610.03029
Intrinsic explainability remains a challenging problem, particularly in contexts where multilayer perceptrons (MLPs) require dynamic re-training within an optimization environment. This paper investigates how MLPs and their training dynamics can be represented and studied in non-Euclidean spaces; our representation features the Poincaré model of hyperbolic geometry. We aim to capture the geometric evolution of their weighted topology and self-organization over time. Instead of restricting the analysis to single checkpoints---as per established measure-based explainability methods---we construct temporal \textit{parameter graphs}, i.e., snapshots over time $T$ steps of the optimization/training process for MLPs. This reflects the view that neural networks encode information not only in their weights but also in the trajectory traced during training. Drawing on the idea that many complex networks admit embeddings in hidden metric spaces where distances correspond to connection likelihood, we present a geometric and temporal graph-based metalearning framework for obtaining dynamic hyperbolic representations of the underlying neural parameter graphs. Our model embeds temporal parameter graphs in the Poincaré model ball, and learns from them while maintaining equivariance to within-snapshot neuron permutations and invariance to permutations of past snapshots. In doing so, the approach preserves functional equivalence over time and recovers the latent evolving geometry of the network. Experiments on regression and classification tasks with trained MLPs show strong meta-network performance, accompanied by hyperbolic temporal representations. This reveals how the network structure emerges over time under specific training environments, thus providing insights into the network's self-organization.
https://arxiv.org/abs/2610.03000
Real-time conversational agents require speaker diarization that streams and runs on a CPU. Most systems apply an utterance-level speaker encoder to short, heavily overlapping chunks, which wastes computation and leaves the model optimized for the wrong task. We instead turn a state-of-the-art speaker recognition architecture into a causal frame-level encoder that reads the stream once and emits one embedding every 80~ms from a bounded two-second window of past audio, and pair it with online clustering that gates every update on the self-similarity of the stream. Trained only by distillation from an utterance-level teacher on simulated and out-of-domain mixtures, and evaluated with one fixed set of hyperparameters, the system is the most accurate streaming diarizer on low-overlap benchmarks at sub-second latency, degrades far less than cache-based systems as the number of speakers grows, and runs five times faster than real time on a single CPU thread.
https://arxiv.org/abs/2610.02941
Jazz pianists develop distinctive traits that experienced listeners can often identify within seconds, yet the features underlying this recognition resist formal description. We study jazz pianist style through the lens of a pretrained symbolic music transformer, showing that its learned representations already encode pianist identity well enough for highly accurate classification across two benchmarks. We then augment the transformer with cross-attention over learned pianist identity embeddings, enabling it to generate music conditioned on a specific artist's style. Two evaluation protocols confirm that the generator captures meaningful stylistic structure: a sliding-window classifier consistently attributes conditioned continuations to the correct artist, far above unconditioned baselines; and a classifier trained entirely on synthetic generations identifies real pianists across 12 classes with 87% chunk-level and 95% song-level accuracy. Finally, we repurpose the classifier to locate the most characteristic moments within a performance, surfacing the specific musical gestures that distinguish each pianist's voice.
https://arxiv.org/abs/2610.02918
Match only geometry you can identify; otherwise spread the penalty. We quantify that decision by the trust ratio tau = epsilon / gamma (estimation uncertainty over spectral separation). Under the linear-quadratic Matching response, oracle-relative drift between estimated and oracle projector matching scales as tau^2 for probes in the chosen top-r deployment subspace -- O(tau^2) in the Davis-Kahan separation region tau < 1/2, with practical usefulness depending on constants. Confidence-Calibrated Matching (CCM) turns tau into a policy -- directional when tau is small, progressively isotropic when not -- with thresholds from calibration, not from the theorem (match sits in the separation region; soft is mostly heuristic). Experiments show both regimes, including UCI HAR embeddings where always-match is worse than abstain on every cell.
https://arxiv.org/abs/2610.02894
Multimodal Large Language Models (MLLMs) suffer from hallucinations, creating a critical need for Uncertainty Quantification (UQ) to ensure reliable deployment. However, existing approaches struggle to detect uncertainty caused by superficial associations, especially when the query-relevant signal is weak. We mainly attribute this issue to their bias toward aleatoric uncertainty arising from data ambiguity, overlooking epistemic uncertainty stemming from model limitations. To further decompose uncertainty types for a comprehensive UQ, we propose Causal-Invariant Masking (CIM), which measures the semantic shift between the original predictions and those conditioned on a causally-focused view. Based on this framework, we introduce Semantic Divergence as our core metric for UQ and provide theoretical evidence that it converges to the variance of model's sensitivity to non-causal correlations, establishing its ability to capture MLLM's limitation. To accelerate UQ in MLLMs, we further propose Expected Embedding Drift (EED), a fast geometric proxy metric that estimates semantic shift directly within the hyperspherical embedding space. Experiments show that our method achieves state-of-the-art performance on various benchmarks, while the proposed EED accelerates by nearly 50% with comparable performance.
https://arxiv.org/abs/2610.02887
Multilingual encoders can exhibit reduced retrieval effectiveness when queries and relevant documents differ in language, despite strong same-language performance. We investigate whether Finnish and Swedish cross-lingual retrieval can improve while preserving an encoder's existing same-language performance and document index. We combine a query-only low-rank adapter, trained against frozen document embeddings, with deterministic routing based on query and index languages. Cross-language queries use the adapter, while same-language queries use the original encoder. SampoTron, our fine-tuned low-rank (LoRA) adapter alongwith the Nemotron-3-Embed-1B model, improves average retrieval quality across six English, Finnish, and Swedish directions from 0.241 to 0.291 in normalized discounted cumulative gain (nDCG) at rank ten, a 20.9% relative gain on a sampled financial benchmark. All six cross-lingual directions improve, and routing preserves the original same-language performance, including two full-corpus Finnish evaluations. The approach enables selective cross-language specialization with reusable document embedding vectors.
https://arxiv.org/abs/2610.02875
Safety heads are lightweight classifiers attached to pretrained language models for flagging harmful inputs before generation. Their empirical detection performance has been studied, but their formal robustness properties remain largely unexplored. We ask when a State Space Model (SSM)-based safety head can be certified to produce the same prediction for all inputs within a bounded embedding-space perturbation. We prove that the answer turns on a single condition: the $l_\infty$ norm of the state transition matrix must satisfy $\norm{A}_\infty<1$ (the \emph{contraction condition}), which enables exact interval bound propagation (IBP) certification for linear time-invariant classifiers. When the contraction condition holds, the reachable output interval has bounded steady-state width and examples can be certified as robustly classified. When it fails, the interval grows exponentially with sequence length and certification is impossible at any practical perturbation radius. We enforce contraction with a hinge penalty and show on toxic comment data that certified fraction improves from 41\% to 59\%, with a sharp empirical phase transition at $\norm{A}_\infty=1$ matching the theory. Applying a contraction-regularized S4 head to jailbreak detection on JailbreakBench, we achieve a zero-shot transfer to AdvBench (DR=0.994) and HarmBench (DR=0.988). A logistic regression on mean-pooled Mamba-130M embeddings matches or exceeds the S4 head on every detection metric, confirming that harmful intent is already linearly separable in the embedding space. The S4 safety head's contribution is not superior discrimination but the formal certification that no probe-based approach provides.
https://arxiv.org/abs/2610.02853
As robots are increasingly deployed in unstructured, real-world environments, the ability to reason about complex spatial and semantic relationships among objects remains a fundamental challenge in enabling robust and generalizable manipulation and navigation. For example, deciding where to search for an object that is not in plain sight depends on where it is physically plausible as well as semantically likely. Popular methods such as cosine similarity with CLIP struggle to disambiguate between spatially and semantically similar objects that could contain a target object. We propose Landmark-Oriented Container Discrimination Using Spatial Graphs (LOCUS). To jointly reason about spatial information and semantics, we train a GNN to update CLIP embeddings on a full environment scene graph by passing embedding information between nodes based on proximity. CLIP embeddings, augmented by semantic knowledge from a fusion of household ontologies provide a robust semantic signal. We evaluate in simulation on a noiseless scene graph from simulator metadata, making the approach detection-agnostic. Our approach outperforms random, CLIP, Tidybot, and an LLM planner in the majority of room classes and configurations in simulation. To show our approach is robust to scene graph node placement and label noise, we demonstrate a physical mobile manipulator running in an exploration pipeline start-to-finish including scene graph labels from Detic.
https://arxiv.org/abs/2610.02803
Large language models (LLMs) increasingly serve as general-purpose interfaces to factual knowledge, but their parameters do not automatically reflect information that changes after pretraining. Knowledge editing (KE) provides a targeted alternative to costly retraining by modifying selected knowledge and preserving unrelated knowledge and general capabilities. Conventional KE uses structured factual triples, whereas unstructured KE (UKE) uses free-form passages containing multiple facts. Nonetheless, existing UKE editors exhibit a failure mode known as context reliance: edited LLMs can often reproduce the editing passage but fail to reliably recall its individual facts without the original passage context. We identify context-induced difficulty underestimation under the standard passage-level editing objective: later facts receive increasingly rich ground-truth context and consequently incur lower initial losses, making them appear easier to learn. In response, we propose FOVEATED, a plug-and-play framework that constructs focused views of each sentence by randomly shifting the Rotary Position Embedding (RoPE) positions assigned to the keys of its preceding context. The perturbation is applied during editing and removed afterward, leaving the model's native positional encoding unchanged at inference time. We instantiate FOVEATED for both direct-optimization and locate-then-edit editors. We theoretically analyze how FOVEATED counteracts context-induced difficulty underestimation and empirically demonstrate consistent improvements across five KE editors, two LLM backbones, and three benchmarks.
https://arxiv.org/abs/2610.02772
The superficial white matter (SWM), a critical brain region for cognition across the lifespan and brain disease, contains abundant short-range association fibers whose organization remains incompletely characterized, in part because the short trajectories and highly variable cortical folding make correspondence across individuals challenging. Anatomically corresponding connections may vary in spatial location across individuals and therefore may not be adequately defined by geometric proximity alone. We introduce FiberGeoText (FGT), a vision-language model (VLM) for organizing short-range superficial white matter (SWM) streamlines reconstructed from ultra-high-resolution diffusion MRI into population-level clusters. FGT jointly represents three complementary properties of each streamline: its three-dimensional trajectory, its cortical anatomical context, and its shape. Cortical endpoint information from multiple parcellation schemes is expressed as text and encoded using a pretrained large language model (LLM), enabling heterogeneous anatomical descriptions to contribute to a common continuous representation. We evaluated FGT on acquired submillimeter 0.76 mm diffusion MRI data. Compared with state-of-the-art (SOTA) methods, FGT produced substantially greater cortical parcel coherence, within-cluster shape consistency, cluster-size consistency, and cross-subject correspondence. The trained model also generalizes well to unseen subjects with an average of 96.7% of the 5,000 learned clusters recovered, and high consistency of cluster structure between training and testing data. Together, these findings demonstrate that integrating geometric, anatomical, and shape information by learning multimodal deep embeddings with a VLM model enables robust learning of population-consistent SWM organization despite interindividual anatomical variability.
https://arxiv.org/abs/2610.02755
Vision-language models such as CLIP exhibit strong semantic generalization, but remain limited in fine-grained visual perception. A recent work named KUEA presents a natural remedy by finetuning the image encoder under the supervision of the vision-centric DINOv2 to align their kernel matrices element-wisely, while regularizing the embeddings to remain close to the pretrained visual encoder for preserving image-text semantics in CLIP. However, we show that diminishing the role of the alignment loss to DINOv2 does not necessarily degrade its fine-grained visual performance, suggesting that the kernel-matrix discrepancy may be insufficient for further visual representation enhancement, motivating us to revisit the alignment formulation. In this work, we present a novel perspective to characterize representation alignment on feature subspaces through Kernel Canonical Correlation Analysis (KCCA), which maximizes the projection correlations. In optimization, we derive an efficient end-to-end training scheme upon KKT conditions, avoiding the eigenvalue problem in KCCA. Further, we extend our method into a 3-view formulation, i.e., 3vKCCA, in which the projections from the pretrained text encoder are also incorporated under a unified optimization framework for joint alignment. With CLIP ViT-L/14 on ImageNet-1K, our 3vKCCA improves the MMVP-VLM accuracy from 17.8 to 25.9, substantially outperforming the existing methods, and meanwhile maintains zero-shot image--text retrieval performance.
https://arxiv.org/abs/2610.02718
The Muon optimizer derives its update rule for hidden linear layers by solving a local linearization of the loss penalized by the spectral norm, motivated by an RMS-stability argument for dense linear layers. Standard Muon implementations, however, exclude the input (embedding table) and output (language model head) layers from this principled treatment, for which they use AdamW instead. We present MuonIO, a single Muon-style update for both of these layers. For the language model head $\mathbf{L} \in \mathbb{R}^{V \times d}$, we motivate the use of the $2\to\infty$ operator norm, due to the Lipschitz continuity of the softmax output geometry, while for the embedding table $\mathbf{E} \in \mathbb{R}^{d \times V}$, we draw on the $1 \to 2$ operator norm, based on the one-hot input geometry identified by Bernstein & Newhouse (2025). The identity $\lVert\mathbf{L}\rVert_{2\to\infty}=\lVert\mathbf{L}^\top\rVert_{1\to2}$ then puts both matrices in the same vocabulary-oriented geometry: MuonIO applies a single normalized-vector rule, which appears as column normalization for $\mathbf{E}$ and row normalization for $\mathbf{L}$. Empirical evaluations demonstrate the effectiveness of our approach, with MuonIO reducing I/O optimizer state memory by 50% and I/O update FLOPs by $\sim$46% compared to Muon for 1B LLaMA pretraining on C4, while also improving validation perplexity.
https://arxiv.org/abs/2610.02705
Time series are produced continuously at enormous scale by industrial equipment, wearables, power grids, and clinical monitors, yet annotation remains manual, expensive, and expert-dependent. The binding constraint in large-scale time series analytics is therefore not data volume but label volume, and the question facing a practitioner is concrete: how many examples per class must be labeled before a classifier becomes usable? We study this question directly, in a regime where the label space is fixed and known in advance and the decision rule must be constructed from only K labeled examples per class. We propose Dual-Stream OSSE-LSTM, an episodic metric-learning framework that pairs an Omni-Scale CNN with Squeeze-and-Excitation recalibration, for multi-scale motif extraction without per-dataset kernel tuning, with a Bidirectional LSTM for global temporal context. The two streams are independently normalized and fused into a prototype-oriented embedding. Because decisions taken from a few labels must also be explainable, we introduce Counterfactual Integrated Gradients (C-IG), which attributes the prototype margin between target and opposing classes rather than an isolated classifier logit, and reuses the resulting maps as soft masks for test-time prototype refinement without updating the encoder. On 19 univariate UCR datasets, OSSE-LSTM attains the highest average accuracy and per-dataset win count at every support size, and its accuracy remains within a 0.36-point band (96.36-96.72%) across that range. Its weakest configuration still exceeding the best result any compared baseline achieves at any K (93.99%).
https://arxiv.org/abs/2610.02704
Despite the success of discrete diffusion language models (dLMs) for fast parallel decoding, their non-smooth, high-dimensional space hinders trajectory steering for reasoning and inference acceleration. To overcome this, we present Sigma, the first large-scale (3B/8B) continuous dLM built on steerable, low-dimensional ODE/SDE latent trajectories. Trained blockwise via likelihood optimization, Sigma jointly denoises Gaussian-corrupted token embeddings while learning an optimal embedding geometry. To accelerate training, Sigma leverages pre-trained weights from autoregressive (AR) models for warm-starting. During inference, we identify classifier-free guidance and score temperature as essential for high-fidelity reasoning and coding. Across comprehensive math reasoning and coding evaluations against state-of-the-art discrete counterparts (masked dLMs and AR baselines), Sigma achieves competitive performance with discrete models on standard benchmarks (e.g., GSM8K, Minerva, HumanEval, MBPP) after pre-training and on challenging reasoning tasks (e.g., MATH-500, AIME) after supervised fine-tuning. Beyond performance parity, we uncover key structural properties unique to continuous dLMs: (i) embedding-space steering effectively governs the quality-diversity trade-off, yielding strong pass@k performance and (ii) continuous trajectories enable graceful degradation for low NFEs and efficient distillation. These establish continuous dLMs as a promising paradigm for efficient language generation.
https://arxiv.org/abs/2610.02665
Numerical measurements capture how a system behaves, but often leave the meanings of its variables unspecified. Some variables are measured but never labeled, and others are never measured at all. Existing methods assign semantics to such variables by consulting general human knowledge, but this inherits its biases where that knowledge exists and offers nothing where it does not. We bridge this gap between measurements and their meanings with causal structure instead, reading a variable's semantics from how it acts on other variables. We formalize this as structure-constrained semantic alignment, in which the embedding of each unnamed variable is solved under the dependence relations implied by the causal graph, with the embeddings of a few known names as anchors. Accordingly, we build CausalBridge, a framework that discovers the causal graph from the measurements, latent variables included, solves for the embeddings under those relations, and expresses them as names through a language model. The causal structure reflects the mechanism that generated the measurements and is recovered from the measurements alone, which may make it the one source of information free of bias from human knowledge. We evaluate CausalBridge on five questionnaires and three robotics scenarios, with 20 to 90% of the variable names masked. It recovers the semantics of observed and latent variables more accurately than existing methods that rely on association, and its lead widens as less of the system is documented. The graph it discovers names variables as accurately as the documented one, and a new system is named in minutes and at a fraction of the cost of sampling methods. Once the semantic gap is bridged faithfully, machines can understand the world and take actions causally.
https://arxiv.org/abs/2610.02594
Zero-shot classifiers are useful for routing user requests to specialized LLM tasks, but scoring every request against a large candidate set is expensive: a zero-shot NLI classifier must evaluate one premise-hypothesis pair per label, so cost scales linearly with taxonomy size. We study a student-guided teacher distillation pipeline for a fixed taxonomy of 60 LLM task categories: a compact ModernBERT classifier predicts the full category distribution in one forward pass and retrieves a small top-k candidate set, and a larger DeBERTa-v3 zero-shot NLI classifier reranks only those candidates rather than all 60 labels; the resulting teacher labels iteratively improve the student, which produces sharper candidates for the next round. Unlike generic embedding retrieval or clustering-derived shortlists used in extreme multi-label classification, our candidate generator is trained end-to-end on the target taxonomy and is the same model serving production traffic, distinguishing it from LLM-routing work that routes between candidate models, and from concurrent System-1 encoder-classifier proposals (e.g. TypeSafe AI's Jev and the open-source Laya project) whose training methodology is undocumented or RL-based. Our best student checkpoint reaches 77.5% teacher agreement on a 200-example evaluation set, and preliminary coverage measurements show Coverage@16 of 91-100%, suggesting top-k sets retain most of the teacher's decision-relevant information. We further show truncated top-k teacher scores should not be treated as full 60-class soft targets for KL distillation: zeroing untruncated classes destroys the dark knowledge soft-label distillation depends on, introducing systematic bias rather than a harmless sparse approximation. A complete evaluation, including coverage at multiple k on a held-out set, an embedding-retrieval baseline, and a larger human-reviewed test set, remains in progress.
https://arxiv.org/abs/2610.02516
Recent benchmarks rely on user simulators to evaluate AI agents in multi-turn interaction. While existing simulation techniques demonstrate surface fidelity to human style and behavior, ecologically valid interactive benchmarking also requires alignment in when and how agents fail across simulated and real user populations. We find that existing simulators lack outcome calibration: agreement with observed success rates and failure patterns when real users interact with the same agent. We introduce Calibrated User Embeddings (CUE), a framework that both encodes observed sessions and samples continuous representations, then decodes them into persona commands to steer LLMs to act as user simulators without training. Through this, we evaluate user-conditioned replay of past sessions and aggregate metric agreement when sampling novel personas for the same tasks. On $\tau^2$-Bench, CUEd simulators commit fewer simulator-attributed errors and more faithfully reproduce real-user agent failure modes, aggregate success rates, and outcomes for specific task-user pairs than other persona-based simulation methods. These gains coexist with competitive user fidelity as measured using metrics established in prior work. After being fit to mostly customer support interactions, the same CUEd simulators generalize to document creation, math tutoring, and casual conversation, and remain effective across different simulator LLMs without CUE retraining.
https://arxiv.org/abs/2610.02460
Joint-Embedding Predictive Architectures (JEPAs) enable agents to plan in latent space by imagining the outcomes of candidate actions, yet task specification remains a bottleneck. Visual targets provide precise local gradients but poor distant guidance, while language is flexible yet limited by noisy cross-modal alignment or dependence on distinct large generative models. We introduce LAGO (Latent Goal Prediction from Language), a hierarchical world model in which a single predictor both forecasts action-conditioned dynamics and grounds language instructions as sequences of intermediate latent subgoals, training both modes with a single regression objective over a shared latent space. At each planning step, LAGO predicts a sequence of latent subgoals from a language instruction and optimizes an action sequence using a soft-minimum alignment cost that rewards subgoal proximity without enforcing a rigid path. Subgoals are repredicted as the agent's state evolves, turning a single long-horizon instruction into a sequence of locally tractable objectives. Across environments spanning navigation and manipulation, LAGO outperforms flat and hierarchical image-goal planners, with the largest gains on long-horizon navigation with curved, hazard-constrained paths, where it more than doubles the success rate of a goal-conditioned behavior cloning policy trained on the same demonstrations. Grounding language in the world model's own latent space also outperforms vision-language reward models, including one that plans with ground-truth dynamics.
https://arxiv.org/abs/2606.20627